Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

7090704 .. 7092539

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACTAAGGTGAAAGATGAGCCACGCGCTTCCGTTGAAGGTGGATGTGGTGTTGCCGACGGTGACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTGTTGAGAAATCGATTAACGAAGTTAGGTCCACGGAGATTCAAACCGCTGAGCCAACGGTTCCTCCAAATCAACTTACTATTTTCTTTGGTGGAAGTGTTACTGTGTTTGATGGACTTCCATCAGAAAAGGTTCAAGAAATCCTTCGTATTGCTGCTAAAGCAATGGAGACAAAGAATTCTACAAGCATCAGTCCTGTCTCATCGCCAGCACTGAACAGAGCTCCTTCTTTCTCAAGCACATCTAATGTGGCATCACCAGCTGCACAGCCATTTCCTATTCAGCCAATCTCGTTTTGCAGATCCACGGCTGATCTACCTATTGCAAGGAGGCATTCGCTTCAACGATTCCTCGAGAAAAGACGGGACAGATTGGTCAACAAAAACCCTTACCCTACTTCAGACTTCAAAAAGACAGATGTCCCAACAGGCAATGTCTCTATCAAGGAGGAATTTCCAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

187

Amino Acids

19.93

Weight (kDa)

7.75

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	55 - 85	2.6e-14	tify domain
Jas_motif	PF09425	139 - 164	2.3e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccII	CGCG	2 cut(s)	27, 74
AciI	CCGC	4 cut(s)	69, 74, 87, 144
AclWI	GGATC	2 cut(s)	103, 393
AcsI	RAATTY	2 cut(s)	274, 548
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	38, 140, 233, 440, 505
AluBI	AGCT	2 cut(s)	320, 359
AluI	AGCT	2 cut(s)	320, 359
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	260, 301, 538
AlwI	GGATC	2 cut(s)	103, 393
Ama87I	CYCGRG	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	251, 359
ApoI	RAATTY	2 cut(s)	274, 548
Asp700I	GAANNNNTTC	2 cut(s)	228, 240
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	29, 74
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	22, 74, 345
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	238, 346
BccI	CCATC	2 cut(s)	203, 226
BceAI	ACGGC	2 cut(s)	82, 420
BcoDI	GTCTC	3 cut(s)	260, 301, 538
BisI	GCNGC	4 cut(s)	70, 75, 252, 360
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	71, 76, 253, 361
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	91, 159
BmsI	GCATC	2 cut(s)	294, 359
BoxI	GACNNNNGTC	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	129, 402
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse3DI	GCAATG	2 cut(s)	267, 535
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	129, 402
BseGI	GGATG	1 cut(s)	50
BseMI	GCAATG	2 cut(s)	267, 535
BseMII	CTCAG	2 cut(s)	69, 138
BseXI	GCAGC	2 cut(s)	238, 346
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	2 cut(s)	27, 74
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	476, 503
BsmAI	GTCTC	3 cut(s)	260, 301, 538
BsmFI	GGGAC	2 cut(s)	476, 503
BsmI	GAATGC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	81, 95, 398, 409
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	69, 74, 87, 144
BspCNI	CTCAG	2 cut(s)	70, 139
BspDI	ATCGAT	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	27, 74
BspLI	GGNNCC	2 cut(s)	91, 159
BspPI	GGATC	2 cut(s)	103, 393
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	267, 535
BssECI	CCNNGG	2 cut(s)	129, 402
BssMI	GATC	4 cut(s)	81, 95, 398, 409
Bst4CI	ACNGT	3 cut(s)	62, 157, 202
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	4 cut(s)	6, 78, 147, 561
BstDSI	CCRYGG	2 cut(s)	129, 402
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	2 cut(s)	27, 74
BstHHI	GCGC	2 cut(s)	29, 74
BstKTI	GATC	4 cut(s)	84, 98, 401, 412
BstMAI	GTCTC	3 cut(s)	260, 301, 538
BstMBI	GATC	4 cut(s)	81, 95, 398, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 356
BstPAI	GACNNNNGTC	1 cut(s)	515
BstUI	CGCG	2 cut(s)	27, 74
BstV1I	GCAGC	2 cut(s)	238, 346
BstX2I	RGATCY	2 cut(s)	95, 398
BstYI	RGATCY	2 cut(s)	95, 398
Bsu15I	ATCGAT	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	110
BtgI	CCRYGG	2 cut(s)	129, 402
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	2 cut(s)	29, 74
Cfr13I	GGNCC	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	8 cut(s)	22, 77, 151, 320, 359, 367, 382, 407
CviKI_1	RGCY	8 cut(s)	22, 77, 151, 320, 359, 367, 382, 407
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	4 cut(s)	6, 78, 147, 561
DpnI	GATC	4 cut(s)	83, 97, 400, 411
DpnII	GATC	4 cut(s)	81, 95, 398, 409
DrdI	GACNNNNNNGTC	1 cut(s)	470
DseDI	GACNNNNNNGTC	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	322
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	2 cut(s)	476, 503
Fnu4HI	GCNGC	4 cut(s)	70, 75, 252, 360
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	4 cut(s)	70, 75, 252, 360
GlaI	GCGC	2 cut(s)	28, 73
GluI	GCNGC	4 cut(s)	70, 75, 252, 360
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	2 cut(s)	29, 74
Hin6I	GCGC	2 cut(s)	27, 72
HinP1I	GCGC	2 cut(s)	27, 72
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	136, 444
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	22, 74, 345
Hpy166II	GTNNAC	2 cut(s)	129, 475
Hpy188I	TCNGA	2 cut(s)	223, 499
Hpy188III	TCNNGA	2 cut(s)	233, 451
Hpy8I	GTNNAC	2 cut(s)	129, 475
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	32, 251, 333
HpyCH4III	ACNGT	3 cut(s)	62, 157, 202
HpyCH4V	TGCA	3 cut(s)	362, 396, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 356
HpyF3I	CTNAG	4 cut(s)	6, 78, 147, 561
HspAI	GCGC	2 cut(s)	27, 72
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	81, 95, 398, 409
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	106, 306, 318, 369, 510
Lsp1109I	GCAGC	2 cut(s)	238, 346
LweI	GCATC	2 cut(s)	294, 359
MaeIII	GTNAC	2 cut(s)	62, 196
MalI	GATC	4 cut(s)	83, 97, 400, 411
MboI	GATC	4 cut(s)	81, 95, 398, 409
MflI	RGATCY	2 cut(s)	95, 398
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	2 cut(s)	274, 548
MnlI	CCTC	4 cut(s)	171, 420, 458, 538
MroXI	GAANNNNTTC	2 cut(s)	228, 240
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	2 cut(s)	146, 359
MspI	CCGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	430
MvnI	CGCG	2 cut(s)	27, 74
MwoI	GCNNNNNNNGC	2 cut(s)	257, 356
NdeII	GATC	4 cut(s)	81, 95, 398, 409
NlaIV	GGNNCC	2 cut(s)	91, 159
NmuCI	GTSAC	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	449
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	2 cut(s)	228, 240
PfeI	GAWTC	2 cut(s)	136, 444
PkrI	GCNGC	4 cut(s)	71, 76, 253, 361
PshAI	GACNNNNGTC	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	91, 159
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	95, 398
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	70, 75, 252, 360
Sau3AI	GATC	4 cut(s)	81, 95, 398, 409
Sau96I	GGNCC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	7 cut(s)	12, 43, 128, 231, 322, 361, 418
SfaNI	GCATC	2 cut(s)	294, 359
Sfr274I	CTCGAG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	126
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	331, 449
SmoI	CTYRAG	2 cut(s)	331, 449
Sse9I	AATT	2 cut(s)	274, 548
SsiI	CCGC	4 cut(s)	69, 74, 87, 144
SstI	GAGCTC	1 cut(s)	322
TaaI	ACNGT	3 cut(s)	62, 157, 202
TaqI	TCGA	2 cut(s)	110, 450
TasI	AATT	2 cut(s)	274, 548
TauI	GCSGC	2 cut(s)	72, 77
TfiI	GAWTC	2 cut(s)	136, 444
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	251, 359
Tsp45I	GTSAC	1 cut(s)	62
TspGWI	ACGGA	2 cut(s)	22, 146
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	2 cut(s)	274, 548
XhoI	CTCGAG	1 cut(s)	449
XmnI	GAANNNNTTC	2 cut(s)	228, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.