Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

18345401 .. 18348150

Gene Structure 2750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGGAAAAAGCAGAAGTTGGTTGTGATCTGAAGCTTTCAGAGATGGAGAAAGAAATGGTTGCCCAAAACAAGCCAAACCAGACAGAGGATGATCTGCAGAACATCAGGAAAGGACCATCTGCACTAAACATTACCAGTCCTGCTCCGGCTCAGCTTACCATCTTCTATGCAGGGAGCGTTAGTGTGTTTGACGCAATTACTGCAGAAAAGGTTCGTGAACTTATGCTTATTGCTGCTGCTGCTGCTGATAAGAAGACCAGTGATGTGAAGAATACTGCGACAAGCGGTCCTCCAAGTCCACTGGTTCGTACAGGGTCGTCCTCGCTGCAAAACTCTTCTGCTCCTGGTTCACCAGTTGTCCAGCCCTACCCTGATCAGAAGAGTTCCACCAGCAAATTGGAAGCTGGGTTTCCCATTGCAAGGAGACACTCTCTTCAGCGCTTCCTGGAGAAGCGACGTGACAGGTTGGTCAGCAACAGTCCATATCCTACTTCGCCAGCAACACCGATGGACGACAGCTCAAAAACTAATCCGAGCAATAACGCTTCTCCGGGTGTGGGTTGCTTCAAACAATCTGCCATGGTTCAGGAAGAAACTCAACCAAGTTCGGTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

207

Amino Acids

22.0

Weight (kDa)

6.61

Isoelectric Point (pI)

67.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	47 - 80	4.4e-16	tify domain
Jas_motif	PF09425	139 - 164	4.3e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	470
AciI	CCGC	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	53, 422
AfaI	GTAC	1 cut(s)	313
AfeI	AGCGCT	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	88, 423, 560
AgsI	TTSAA	1 cut(s)	571
AhdI	GACNNNNNGTC	1 cut(s)	288
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	346, 447
AluBI	AGCT	4 cut(s)	37, 157, 407, 522
AluI	AGCT	4 cut(s)	37, 157, 407, 522
Alw26I	GTCTC	1 cut(s)	421
Aor51HI	AGCGCT	1 cut(s)	443
ApeKI	GCWGC	5 cut(s)	236, 239, 242, 245, 328
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	116, 290
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	1 cut(s)	345
AvaII	GGWCC	2 cut(s)	116, 290
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	5 cut(s)	223, 226, 229, 232, 315
BccI	CCATC	4 cut(s)	40, 127, 170, 505
BciT130I	CCWGG	2 cut(s)	348, 449
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	619
BfmI	CTRYAG	2 cut(s)	98, 204
BfoI	RGCGCY	1 cut(s)	445
BisI	GCNGC	5 cut(s)	237, 240, 243, 246, 329
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	5 cut(s)	238, 241, 244, 247, 330
Bme1390I	CCNGG	3 cut(s)	348, 449, 555
Bme18I	GGWCC	2 cut(s)	116, 290
BmeRI	GACNNNNNGTC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	116, 290
BmrFI	CCNGG	3 cut(s)	348, 449, 555
BpiI	GAAGAC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	582
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 423, 560
Bse1I	ACTGG	4 cut(s)	138, 261, 309, 356
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	348, 449
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	88, 423, 560
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	4 cut(s)	138, 261, 309, 356
BseXI	GCAGC	5 cut(s)	223, 226, 229, 232, 315
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	149, 554
BslI	CCNNNNNNNGG	3 cut(s)	88, 423, 560
BsmAI	GTCTC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	28, 94, 376
Bsp1720I	GCTNAGC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	102, 208
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	4 cut(s)	138, 261, 309, 356
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	3 cut(s)	28, 94, 376
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	348, 449
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	3 cut(s)	343, 377, 441
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	3 cut(s)	31, 97, 379
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	28, 94, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 242, 245
BstNI	CCWGG	2 cut(s)	348, 449
BstSCI	CCNGG	3 cut(s)	346, 447, 553
BstSFI	CTRYAG	2 cut(s)	98, 204
BstV1I	GCAGC	5 cut(s)	223, 226, 229, 232, 315
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	268, 302
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	116, 290
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	1 cut(s)	583
CviJI	RGCY	7 cut(s)	37, 76, 152, 157, 367, 407, 522
CviKI_1	RGCY	7 cut(s)	37, 76, 152, 157, 367, 407, 522
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	30, 96, 378
DpnII	GATC	3 cut(s)	28, 94, 376
DrdI	GACNNNNNNGTC	1 cut(s)	470
DriI	GACNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	470
Eam1104I	CTCTTC	3 cut(s)	343, 377, 441
Eam1105I	GACNNNNNGTC	1 cut(s)	288
EarI	CTCTTC	3 cut(s)	343, 377, 441
Eco130I	CCWWGG	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	116, 290
Eco47III	AGCGCT	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	53, 422
EcoRII	CCWGG	2 cut(s)	346, 447
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	1 cut(s)	586
FaiI	YATR	4 cut(s)	171, 227, 487, 584
FatI	CATG	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	237, 240, 243, 246, 329
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	237, 240, 243, 246, 329
FspBI	CTAG	1 cut(s)	619
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	5 cut(s)	237, 240, 243, 246, 329
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	445
HapII	CCGG	2 cut(s)	149, 554
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	586
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	2 cut(s)	149, 554
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	221, 302, 353
Hpy188I	TCNGA	4 cut(s)	33, 43, 381, 537
Hpy188III	TCNNGA	3 cut(s)	109, 218, 590
Hpy8I	GTNNAC	3 cut(s)	221, 302, 353
Hpy99I	CGWCG	1 cut(s)	462
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	6 cut(s)	100, 125, 173, 206, 331, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 242, 245
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	1 cut(s)	586
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	28, 94, 376
LmnI	GCTCC	3 cut(s)	151, 177, 349
Lsp1109I	GCAGC	5 cut(s)	223, 226, 229, 232, 315
MaeI	CTAG	1 cut(s)	619
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	3 cut(s)	30, 96, 378
MboI	GATC	3 cut(s)	28, 94, 376
MboII	GAAGA	7 cut(s)	157, 268, 283, 330, 394, 428, 605
MluCI	AATT	2 cut(s)	198, 398
MnlI	CCTC	3 cut(s)	82, 303, 334
MroXI	GAANNNNTTC	1 cut(s)	213
MspI	CCGG	2 cut(s)	149, 554
MspR9I	CCNGG	3 cut(s)	348, 449, 555
MvaI	CCWGG	2 cut(s)	348, 449
MwoI	GCNNNNNNNGC	3 cut(s)	203, 242, 245
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	28, 94, 376
NlaIII	CATG	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	461
PdmI	GAANNNNTTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	5 cut(s)	238, 241, 244, 247, 330
Psp6I	CCWGG	2 cut(s)	346, 447
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	346, 447
PspPI	GGNCC	2 cut(s)	116, 290
PstI	CTGCAG	2 cut(s)	102, 208
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SatI	GCNGC	5 cut(s)	237, 240, 243, 246, 329
Sau3AI	GATC	3 cut(s)	28, 94, 376
Sau96I	GGNCC	2 cut(s)	116, 290
ScrFI	CCNGG	3 cut(s)	348, 449, 555
SetI	ASST	7 cut(s)	39, 159, 216, 409, 463, 470, 524
SfcI	CTRYAG	2 cut(s)	98, 204
SinI	GGWCC	2 cut(s)	116, 290
Sse9I	AATT	2 cut(s)	198, 398
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	619
StyD4I	CCNGG	3 cut(s)	346, 447, 553
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	463
TasI	AATT	2 cut(s)	198, 398
TscAI	CASTG	2 cut(s)	268, 309
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	5 cut(s)	236, 239, 242, 245, 328
Tsp45I	GTSAC	1 cut(s)	461
TspRI	CASTG	2 cut(s)	268, 309
VpaK11BI	GGWCC	2 cut(s)	116, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.