Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

8948046 .. 8950781

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGAAAAATTTGAGCTTGGTGATGTCAAAGAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTAATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCTGCACTTAATATCCCTGCTCGTTCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTCCGTGAACTTCTTATCGCGGCTGCTGCAGCTGCTGCTGCTGCTGATAAGGTCATTGATGTAAATAATAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCGAGTTCTCTTCAAAATTCTTCTACCGCTCCTGGTTCACCAGTTGTCCAGCTCTACCCTGACCAGAAGAGTTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGAAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGTAGGGACAGGTACTCCCCCGTAAATACTGTCATCAAATTGATTAGAATTCAAGTTCGCCATCACATGATGTATACCTTTTGTTTACAGGACATTAATTTGTTTTTTTTACTGTTTTGGTTATTGCAGATTGGGCAGCAAGAGTCCATACCCTACTTCTCCAGCAACACTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

211

Amino Acids

23.33

Weight (kDa)

7.71

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	46 - 76	1.4e-13	tify domain
Jas_motif	PF09425	139 - 156	6e-10	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	530
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	224, 342
AcsI	RAATTY	4 cut(s)	11, 331, 410, 504
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	329, 509
AjnI	CCWGG	2 cut(s)	346, 447
AluBI	AGCT	7 cut(s)	19, 50, 148, 236, 285, 367, 407
AluI	AGCT	7 cut(s)	19, 50, 148, 236, 285, 367, 407
AlwNI	CAGNNNCTG	2 cut(s)	194, 239
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	8 cut(s)	227, 230, 233, 236, 239, 242, 245, 592
ApoI	RAATTY	4 cut(s)	11, 331, 410, 504
AseI	ATTAAT	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	35, 345
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	433
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	8 cut(s)	214, 217, 223, 226, 229, 232, 245, 604
BccI	CCATC	3 cut(s)	118, 161, 525
BciT130I	CCWGG	2 cut(s)	348, 449
BfmI	CTRYAG	2 cut(s)	195, 231
BisI	GCNGC	9 cut(s)	225, 228, 231, 234, 237, 240, 243, 246, 593
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	9 cut(s)	226, 229, 232, 235, 238, 241, 244, 247, 594
Bme1390I	CCNGG	2 cut(s)	348, 449
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	348, 449
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	470, 601
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	3 cut(s)	316, 356, 631
BseBI	CCWGG	2 cut(s)	348, 449
BseMII	CTCAG	2 cut(s)	42, 158
BseNI	ACTGG	3 cut(s)	316, 356, 631
BseXI	GCAGC	8 cut(s)	214, 217, 223, 226, 229, 232, 245, 604
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	2 cut(s)	224, 342
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	43, 157
BspFNI	CGCG	1 cut(s)	224
BspMAI	CTGCAG	2 cut(s)	199, 235
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	3 cut(s)	316, 356, 631
BssMI	GATC	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	531
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	348, 449
Bst4CI	ACNGT	2 cut(s)	487, 570
Bst6I	CTCTTC	3 cut(s)	330, 377, 441
BstAPI	GCANNNNNTGC	2 cut(s)	194, 239
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	51, 144
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 230, 233, 236, 239, 242, 245, 589
BstNI	CCWGG	2 cut(s)	348, 449
BstSCI	CCNGG	2 cut(s)	346, 447
BstSFI	CTRYAG	2 cut(s)	195, 231
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	8 cut(s)	214, 217, 223, 226, 229, 232, 245, 604
BstV2I	GAAGAC	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	624
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	2 cut(s)	194, 239
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	1 cut(s)	610
CviAII	CATG	1 cut(s)	523
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	51, 144
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	330, 377, 441
EarI	CTCTTC	3 cut(s)	330, 377, 441
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	422
EcoRI	GAATTC	2 cut(s)	410, 504
EcoRII	CCWGG	2 cut(s)	346, 447
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	1 cut(s)	526
FaiI	YATR	3 cut(s)	524, 531, 605
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	1 cut(s)	522
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	9 cut(s)	225, 228, 231, 234, 237, 240, 243, 246, 593
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	9 cut(s)	225, 228, 231, 234, 237, 240, 243, 246, 593
GluI	GCNGC	9 cut(s)	225, 228, 231, 234, 237, 240, 243, 246, 593
GsuI	CTGGAG	2 cut(s)	470, 601
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	526
HinfI	GANTC	1 cut(s)	599
HphI	GGTGA	2 cut(s)	35, 345
Hpy166II	GTNNAC	5 cut(s)	212, 299, 353, 531, 542
Hpy8I	GTNNAC	5 cut(s)	212, 299, 353, 531, 542
HpyCH4III	ACNGT	2 cut(s)	487, 570
HpyCH4V	TGCA	8 cut(s)	116, 188, 197, 233, 396, 403, 422, 583
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 230, 233, 236, 239, 242, 245, 589
HpyF3I	CTNAG	2 cut(s)	51, 144
Hsp92II	CATG	1 cut(s)	526
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	8 cut(s)	214, 217, 223, 226, 229, 232, 245, 604
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	76
MboII	GAAGA	7 cut(s)	56, 148, 317, 327, 394, 428, 438
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	9 cut(s)	11, 57, 331, 398, 410, 417, 494, 504, 553
MlyI	GAGTC	1 cut(s)	608
MnlI	CCTC	4 cut(s)	46, 55, 76, 300
MseI	TTAA	3 cut(s)	90, 120, 552
MspA1I	CMGCKG	2 cut(s)	236, 285
MspR9I	CCNGG	2 cut(s)	348, 449
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	348, 449
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	8 cut(s)	194, 230, 233, 236, 239, 242, 245, 589
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	9 cut(s)	226, 229, 232, 235, 238, 241, 244, 247, 594
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	346, 447
PspGI	CCWGG	2 cut(s)	346, 447
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	199, 235
PstNI	CAGNNNCTG	2 cut(s)	194, 239
PvuII	CAGCTG	2 cut(s)	236, 285
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	90, 120, 552
SatI	GCNGC	9 cut(s)	225, 228, 231, 234, 237, 240, 243, 246, 593
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	348, 449
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	195, 231
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	9 cut(s)	11, 57, 331, 398, 410, 417, 494, 504, 553
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	224, 342
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	346, 447
TaaI	ACNGT	2 cut(s)	487, 570
TaqI	TCGA	1 cut(s)	317
TasI	AATT	9 cut(s)	11, 57, 331, 398, 410, 417, 494, 504, 553
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	90, 120, 552
Tru9I	TTAA	3 cut(s)	90, 120, 552
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	8 cut(s)	227, 230, 233, 236, 239, 242, 245, 592
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	4 cut(s)	11, 331, 410, 504
XmiI	GTMKAC	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.