Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

9124803 .. 9128330

Gene Structure 3528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTGAAAAATTTGAGCTTGGTGATGTGAAACAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTAATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCCGCACTTAATATCCCTGCTCGTGCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTCCGTGAACTTCTTATCGCGGCTGCTGCAGCTGCTGCTGATAAGGTCATTGATGTAAATAATAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCGAGTTCTCTTCAAAATTCTTCTACTGCTCCCGGTTCACCAGTTGTCCAGCTCTACCCTGACCAGAAGAGCTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGAAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGTAGGGACAGATTGGGCAGCAAGTGTCCATACCCTACTTCTCCAGCAACACCGGTGGATGATAATGCAAAGACAAACCTCAGCAATAATGCTTCTTCCGGTTTGGGTTGTTTCAAACAATCTGCCGTGGGTCAGGAACAAATTCAACCAAGTTCTGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

204

Amino Acids

21.68

Weight (kDa)

7.62

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	46 - 76	1e-13	tify domain
Jas_motif	PF09425	137 - 161	2.1e-13	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	224
AciI	CCGC	3 cut(s)	114, 224, 608
AcsI	RAATTY	4 cut(s)	11, 325, 404, 591
AcuI	CTGAAG	1 cut(s)	416
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	323, 565, 596
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	8 cut(s)	19, 50, 148, 236, 279, 361, 381, 401
AluI	AGCT	8 cut(s)	19, 50, 148, 236, 279, 361, 381, 401
Alw21I	GWGCWC	2 cut(s)	139, 383
AlwNI	CAGNNNCTG	2 cut(s)	194, 239
AoxI	GGCC	2 cut(s)	63, 609
ApeKI	GCWGC	6 cut(s)	227, 230, 233, 236, 239, 468
ApoI	RAATTY	4 cut(s)	11, 325, 404, 591
AsiGI	ACCGGT	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	35, 339
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	2 cut(s)	139, 383
BbvCI	CCTCAGC	2 cut(s)	51, 530
BbvI	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 480
BccI	CCATC	2 cut(s)	118, 161
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	613
BfmI	CTRYAG	2 cut(s)	195, 231
BisI	GCNGC	8 cut(s)	225, 228, 231, 234, 237, 240, 469, 609
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	8 cut(s)	226, 229, 232, 235, 238, 241, 470, 610
Bme1390I	CCNGG	2 cut(s)	342, 443
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	342, 443
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	2 cut(s)	464, 477
Bpu10I	CCTNAGC	2 cut(s)	51, 530
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	576
BsaWI	WCCGGW	2 cut(s)	502, 548
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	310, 350
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	2 cut(s)	110, 514
BseMII	CTCAG	3 cut(s)	42, 158, 544
BseNI	ACTGG	2 cut(s)	310, 350
BseXI	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 480
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	65, 611
BshTI	ACCGGT	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	139, 383
BsiSI	CCGG	3 cut(s)	342, 503, 549
BslFI	GGGAC	1 cut(s)	470
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	65, 611
Bsp1286I	GDGCHC	2 cut(s)	139, 383
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	114, 224, 608
BspANI	GGCC	2 cut(s)	65, 611
BspCNI	CTCAG	3 cut(s)	43, 157, 543
BspFNI	CGCG	1 cut(s)	224
BspMAI	CTGCAG	2 cut(s)	199, 235
BspQI	GCTCTTC	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	310, 350
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	1 cut(s)	76
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	443
Bst6I	CTCTTC	3 cut(s)	324, 371, 435
BstAPI	GCANNNNNTGC	2 cut(s)	194, 239
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	51, 144, 530
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	110, 514
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 230, 233, 236, 239, 387
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	340, 441
BstSFI	CTRYAG	2 cut(s)	195, 231
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 480
BstV2I	GAAGAC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	65, 611
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	110, 514
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	2 cut(s)	194, 239
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	166
CspAI	ACCGGT	1 cut(s)	502
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
DdeI	CTNAG	3 cut(s)	51, 144, 530
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	324, 371, 435
EarI	CTCTTC	3 cut(s)	324, 371, 435
Ecl136II	GAGCTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	441
EcoT38I	GRGCYC	1 cut(s)	383
FaiI	YATR	1 cut(s)	481
FaqI	GGGAC	1 cut(s)	470
Fnu4HI	GCNGC	8 cut(s)	225, 228, 231, 234, 237, 240, 469, 609
FokI	GGATG	2 cut(s)	97, 521
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	8 cut(s)	225, 228, 231, 234, 237, 240, 469, 609
FspBI	CTAG	1 cut(s)	613
GluI	GCNGC	8 cut(s)	225, 228, 231, 234, 237, 240, 469, 609
GsuI	CTGGAG	2 cut(s)	464, 477
HaeIII	GGCC	2 cut(s)	65, 611
HapII	CCGG	3 cut(s)	342, 503, 549
HgaI	GACGC	1 cut(s)	166
HpaII	CCGG	3 cut(s)	342, 503, 549
HphI	GGTGA	2 cut(s)	35, 339
Hpy166II	GTNNAC	3 cut(s)	212, 293, 347
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	3 cut(s)	212, 293, 347
HpyCH4V	TGCA	7 cut(s)	188, 197, 233, 390, 397, 416, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 230, 233, 236, 239, 387
HpyF3I	CTNAG	3 cut(s)	51, 144, 530
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	3 cut(s)	142, 343, 386
Lsp1109I	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 480
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	613
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	8 cut(s)	56, 148, 311, 321, 388, 422, 432, 537
MfeI	CAATTG	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	139, 383
MluCI	AATT	7 cut(s)	11, 57, 325, 392, 404, 411, 591
MnlI	CCTC	5 cut(s)	46, 55, 76, 294, 539
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	2 cut(s)	90, 120
MspA1I	CMGCKG	2 cut(s)	236, 279
MspI	CCGG	3 cut(s)	342, 503, 549
MspR9I	CCNGG	2 cut(s)	342, 443
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	443
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	194, 230, 233, 236, 239, 387
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	591
PfoI	TCCNGGA	1 cut(s)	441
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	8 cut(s)	226, 229, 232, 235, 238, 241, 470, 610
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	199, 235
PstNI	CAGNNNCTG	2 cut(s)	194, 239
PvuII	CAGCTG	2 cut(s)	236, 279
SacI	GAGCTC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	90, 120
SatI	GCNGC	8 cut(s)	225, 228, 231, 234, 237, 240, 469, 609
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	342, 443
SduI	GDGCHC	2 cut(s)	139, 383
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	2 cut(s)	195, 231
SgrAI	CRCCGGYG	1 cut(s)	502
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	7 cut(s)	11, 57, 325, 392, 404, 411, 591
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	114, 224, 608
SspMI	CTAG	1 cut(s)	613
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	340, 441
TaqI	TCGA	1 cut(s)	311
TasI	AATT	7 cut(s)	11, 57, 325, 392, 404, 411, 591
TauI	GCSGC	2 cut(s)	227, 611
Tru1I	TTAA	2 cut(s)	90, 120
Tru9I	TTAA	2 cut(s)	90, 120
TseI	GCWGC	6 cut(s)	227, 230, 233, 236, 239, 468
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	4 cut(s)	11, 325, 404, 591
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.