Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

5199241 .. 5201486

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTGGAAGATTTGAGCTTGGTGGTGTGAAACAGCCCAAAGAAGAAGCTGTGGAGATTGAGCCCTCTAGTCATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCTGCAATTAATATCCCAGCTCATGCTCCGGCTCAGCTCACCATCTTCTATGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTTCGCGAACTTCTTGCCGTGGCTGCTGCAGCTGCTGCTGATAAGGTCATTGATGTAAAGAGTAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCAAATTCTCTTCAAAATTCTTCTGCTCCTGGATCACCAGTTGTCCAGCTTTACCCTGACCAGAAGAGCTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGGAGGCACTCTCTTCAGCGCTTCTTGGAGAAGCGTAGGGACAGATTGGGCAGCAATAGTCCATATCCTACACCAGCAACAACGGTGGATGATAATGCAAAGACAAACCTCAGCAATGATGCTTCTTCCGGTTTGGGTTGTTTGAAACAATCTGCGGTGGCTCAGGAACAAATTCAACCAAGTTCAGCTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

203

Amino Acids

21.36

Weight (kDa)

8.44

Isoelectric Point (pI)

70.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	46 - 77	1.9e-14	tify domain
Jas_motif	PF09425	136 - 161	7.2e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	4 cut(s)	313, 325, 401, 585
AcuI	CTGAAG	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	323, 559, 590
AjnI	CCWGG	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	2 cut(s)	194, 239
Aor51HI	AGCGCT	1 cut(s)	434
ApeKI	GCWGC	6 cut(s)	227, 230, 233, 236, 239, 465
ApoI	RAATTY	4 cut(s)	313, 325, 401, 585
AseI	ATTAAT	1 cut(s)	120
Asp700I	GAANNNNTTC	2 cut(s)	204, 585
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	142, 336
BanII	GRGCYC	2 cut(s)	66, 380
Bbv12I	GWGCWC	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 477
BccI	CCATC	2 cut(s)	118, 161
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	2 cut(s)	69, 607
BfmI	CTRYAG	2 cut(s)	195, 231
BfoI	RGCGCY	1 cut(s)	436
BisI	GCNGC	6 cut(s)	228, 231, 234, 237, 240, 466
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	6 cut(s)	229, 232, 235, 238, 241, 467
Bme1390I	CCNGG	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	175, 523
BmuI	ACTGGG	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	409, 441
Bpu10I	CCTNAGC	2 cut(s)	524, 576
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	310, 347
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	158, 538, 590
BseNI	ACTGG	2 cut(s)	310, 347
BseXI	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 477
BseYI	CCCAGC	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	140, 543
BslFI	GGGAC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	66, 380
Bsp143I	GATC	2 cut(s)	76, 341
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp68I	TCGCGA	1 cut(s)	210
BspACI	CCGC	1 cut(s)	569
BspCNI	CTCAG	3 cut(s)	157, 537, 589
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	199, 235
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	310, 347
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	76, 341
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	3 cut(s)	324, 368, 432
BstAPI	GCANNNNNTGC	2 cut(s)	194, 239
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	144, 524, 576
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	2 cut(s)	79, 344
BstMBI	GATC	2 cut(s)	76, 341
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 227, 233, 236, 239, 384
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	2 cut(s)	195, 231
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 477
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	508
BtuMI	TCGCGA	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	2 cut(s)	194, 239
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	435
CseI	GACGC	1 cut(s)	166
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	2 cut(s)	74, 134
DdeI	CTNAG	3 cut(s)	144, 524, 576
DpnI	GATC	2 cut(s)	78, 343
DpnII	GATC	2 cut(s)	76, 341
Eam1104I	CTCTTC	3 cut(s)	324, 368, 432
EarI	CTCTTC	3 cut(s)	324, 368, 432
Ecl136II	GAGCTC	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	66, 380
Eco47III	AGCGCT	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	378
Eco57I	CTGAAG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	66, 380
FaeI	CATG	2 cut(s)	77, 137
FaiI	YATR	4 cut(s)	75, 135, 162, 478
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	73, 133
Fnu4HI	GCNGC	6 cut(s)	228, 231, 234, 237, 240, 466
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	2 cut(s)	66, 380
Fsp4HI	GCNGC	6 cut(s)	228, 231, 234, 237, 240, 466
FspBI	CTAG	2 cut(s)	69, 607
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	6 cut(s)	228, 231, 234, 237, 240, 466
GsaI	CCCAGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	436
HapII	CCGG	2 cut(s)	140, 543
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	77, 137
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	140, 543
HphI	GGTGA	2 cut(s)	142, 336
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188III	TCNNGA	3 cut(s)	74, 209, 578
Hpy8I	GTNNAC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	9 cut(s)	116, 164, 188, 197, 233, 387, 394, 413, 512
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 227, 233, 236, 239, 384
HpyF3I	CTNAG	3 cut(s)	144, 524, 576
Hsp92II	CATG	2 cut(s)	77, 137
HspAI	GCGC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	76, 341
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	3 cut(s)	142, 340, 383
Lsp1109I	GCAGC	6 cut(s)	214, 217, 223, 226, 245, 477
LweI	GCATC	2 cut(s)	175, 523
MaeI	CTAG	2 cut(s)	69, 607
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	78, 343
MboI	GATC	2 cut(s)	76, 341
MboII	GAAGA	8 cut(s)	21, 56, 148, 311, 321, 385, 419, 531
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	2 cut(s)	66, 380
MluCI	AATT	7 cut(s)	117, 313, 325, 389, 401, 408, 585
MnlI	CCTC	4 cut(s)	76, 294, 411, 533
MroXI	GAANNNNTTC	2 cut(s)	204, 585
MseI	TTAA	2 cut(s)	90, 120
MspA1I	CMGCKG	3 cut(s)	236, 279, 602
MspI	CCGG	2 cut(s)	140, 543
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	6 cut(s)	194, 227, 233, 236, 239, 384
NdeII	GATC	2 cut(s)	76, 341
NlaIII	CATG	2 cut(s)	77, 137
NruI	TCGCGA	1 cut(s)	210
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	368
PdmI	GAANNNNTTC	2 cut(s)	204, 585
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	6 cut(s)	229, 232, 235, 238, 241, 467
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	199, 235
PstNI	CAGNNNCTG	2 cut(s)	194, 239
PvuII	CAGCTG	3 cut(s)	236, 279, 602
RruI	TCGCGA	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	90, 120
SatI	GCNGC	6 cut(s)	228, 231, 234, 237, 240, 466
Sau3AI	GATC	2 cut(s)	76, 341
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	66, 380
SfaNI	GCATC	2 cut(s)	175, 523
SfcI	CTRYAG	2 cut(s)	195, 231
Sse9I	AATT	7 cut(s)	117, 313, 325, 389, 401, 408, 585
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	2 cut(s)	69, 607
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	499
TasI	AATT	7 cut(s)	117, 313, 325, 389, 401, 408, 585
Tru1I	TTAA	2 cut(s)	90, 120
Tru9I	TTAA	2 cut(s)	90, 120
TseI	GCWGC	6 cut(s)	227, 230, 233, 236, 239, 465
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	4 cut(s)	313, 325, 401, 585
XmnI	GAANNNNTTC	2 cut(s)	204, 585
XspI	CTAG	2 cut(s)	69, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.