Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

9262957 .. 9266414

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG105600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCTGAAAAATTTGAGCTTGGTGATGTGAAACAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTAATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCTGCACTTACTATCCCTGCTCGTGCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTGAGATCTTATGAACTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

75

Amino Acids

8.25

Weight (kDa)

4.85

Isoelectric Point (pI)

69.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	46 - 70	1.3e-12	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	19, 50, 148
AluI	AGCT	3 cut(s)	19, 50, 148
Alw21I	GWGCWC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	35, 217
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	51
BccI	CCATC	2 cut(s)	118, 161
BfmI	CTRYAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	209
BlpI	GCTNAGC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	42, 158
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	76, 209
Bsp1720I	GCTNAGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	43, 157
BspMAI	CTGCAG	1 cut(s)	199
BssMI	GATC	2 cut(s)	76, 209
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	51, 144
BstKTI	GATC	2 cut(s)	79, 212
BstMBI	GATC	2 cut(s)	76, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	194
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	7 cut(s)	5, 19, 37, 50, 65, 109, 148
CviKI_1	RGCY	7 cut(s)	5, 19, 37, 50, 65, 109, 148
DdeI	CTNAG	2 cut(s)	51, 144
DpnI	GATC	2 cut(s)	78, 211
DpnII	GATC	2 cut(s)	76, 209
Eco147I	AGGCCT	1 cut(s)	65
FaiI	YATR	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	166
HphI	GGTGA	2 cut(s)	35, 217
HpyCH4V	TGCA	3 cut(s)	116, 188, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	51, 144
Kzo9I	GATC	2 cut(s)	76, 209
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	3 cut(s)	141, 150, 153
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	78, 211
MboI	GATC	2 cut(s)	76, 209
MboII	GAAGA	2 cut(s)	56, 148
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	11, 57
MnlI	CCTC	3 cut(s)	46, 55, 76
MseI	TTAA	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	76, 209
PceI	AGGCCT	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	76, 209
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	21, 52, 150, 207
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	195
SgeI	CNNG	7 cut(s)	32, 118, 140, 144, 146, 152, 177
Sse9I	AATT	2 cut(s)	11, 57
SseBI	AGGCCT	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	65
TasI	AATT	2 cut(s)	11, 57
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
XapI	RAATTY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.