Rh2CG109900

TIFY 3B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011174
Physical Location & Seq
Forward (+)
9689526 .. 9692044
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG109900.1

Sequence Viewer

Length: 474 bp
ATGGCTGAAAAATTTGAGCTTGGTGATGTGAAACAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTAATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCCGCACTTAATATCCCTGCTCGTGCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTCCGTGAACTTCTTATCGCGGCTGCTGCAGCTGCTGCTGATAAGGTCATTGATGTAAATAATAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCGAGTTCTCTTCAAAATTCTTCTACTGCTCCCGGTTCACCAGTTGTCCAGCTCTACCCTGACCAGAAGAGCTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGAAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGTAGGGACAGGTACTCCCCGTAA

Protein Analysis

157

Amino Acids

17.01

Weight (kDa)

7.74

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 46 - 76 6.7e-14 tify domain
Jas_motif PF09425 137 - 154 4.4e-10 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43440 AT3G43440 AT5G20900
fragaria_vesca FvH4_1g09690
malus_domestica MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica Prupe.7G189200_v2.0.a1
pyrus_communis pycom02g08380 pycom15g20070
rosa_chinensis RchiOBHm_Chr2g0096551
rosa_laevigata RLG00000016648
rosa_multiflora Rmu_sc0004096.1_g000006
rosa_roxburghii Rroxscaffold_2G00145540
rosa_rugosa Rorug02G0058400 Rorug02G0058400
rosa_samantha Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana Rw2G008170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 224
AciI CCGC 2 cut(s) 114, 224
AcsI RAATTY 3 cut(s) 11, 325, 404
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 1 cut(s) 464
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 8 cut(s) 19, 50, 148, 236, 279, 361, 381, 401
AluI AGCT 8 cut(s) 19, 50, 148, 236, 279, 361, 381, 401
Alw21I GWGCWC 2 cut(s) 139, 383
AlwNI CAGNNNCTG 2 cut(s) 194, 239
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 227, 230, 233, 236, 239
ApoI RAATTY 3 cut(s) 11, 325, 404
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 35, 339
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 383
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 139, 383
BbvCI CCTCAGC 1 cut(s) 51
BbvI GCAGC 5 cut(s) 214, 217, 223, 226, 245
BccI CCATC 2 cut(s) 118, 161
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 195, 231
BisI GCNGC 6 cut(s) 225, 228, 231, 234, 237, 240
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 6 cut(s) 226, 229, 232, 235, 238, 241
Bme1390I CCNGG 2 cut(s) 342, 443
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 342, 443
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 310, 350
BseBI CCWGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 42, 158
BseNI ACTGG 2 cut(s) 310, 350
BseXI GCAGC 5 cut(s) 214, 217, 223, 226, 245
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 139, 383
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 139, 383
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 2 cut(s) 114, 224
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 43, 157
BspFNI CGCG 1 cut(s) 224
BspMAI CTGCAG 2 cut(s) 199, 235
BspQI GCTCTTC 1 cut(s) 371
BsrI ACTGG 2 cut(s) 310, 350
BssMI GATC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 443
Bst6I CTCTTC 3 cut(s) 324, 371, 435
BstAPI GCANNNNNTGC 2 cut(s) 194, 239
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 51, 144
BstF5I GGATG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 6 cut(s) 194, 230, 233, 236, 239, 387
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 340, 441
BstSFI CTRYAG 2 cut(s) 195, 231
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 5 cut(s) 214, 217, 223, 226, 245
BstV2I GAAGAC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 2 cut(s) 194, 239
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 463
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 51, 144
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 324, 371, 435
EarI CTCTTC 3 cut(s) 324, 371, 435
Ecl136II GAGCTC 1 cut(s) 381
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 383
FaqI GGGAC 1 cut(s) 470
Fnu4HI GCNGC 6 cut(s) 225, 228, 231, 234, 237, 240
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 6 cut(s) 225, 228, 231, 234, 237, 240
GluI GCNGC 6 cut(s) 225, 228, 231, 234, 237, 240
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 342
HgaI GACGC 1 cut(s) 166
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 35, 339
Hpy166II GTNNAC 3 cut(s) 212, 293, 347
Hpy8I GTNNAC 3 cut(s) 212, 293, 347
HpyCH4V TGCA 6 cut(s) 188, 197, 233, 390, 397, 416
HpyF10VI GCNNNNNNNGC 6 cut(s) 194, 230, 233, 236, 239, 387
HpyF3I CTNAG 2 cut(s) 51, 144
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 3 cut(s) 142, 343, 386
Lsp1109I GCAGC 5 cut(s) 214, 217, 223, 226, 245
LweI GCATC 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 7 cut(s) 56, 148, 311, 321, 388, 422, 432
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 2 cut(s) 139, 383
MluCI AATT 6 cut(s) 11, 57, 325, 392, 404, 411
MnlI CCTC 4 cut(s) 46, 55, 76, 294
MseI TTAA 2 cut(s) 90, 120
MspA1I CMGCKG 2 cut(s) 236, 279
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 342, 443
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 6 cut(s) 194, 230, 233, 236, 239, 387
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 6 cut(s) 226, 229, 232, 235, 238, 241
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 2 cut(s) 199, 235
PstNI CAGNNNCTG 2 cut(s) 194, 239
PvuII CAGCTG 2 cut(s) 236, 279
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SacI GAGCTC 1 cut(s) 383
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 2 cut(s) 90, 120
SatI GCNGC 6 cut(s) 225, 228, 231, 234, 237, 240
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 342, 443
SduI GDGCHC 2 cut(s) 139, 383
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 2 cut(s) 195, 231
SinI GGWCC 1 cut(s) 205
Sse9I AATT 6 cut(s) 11, 57, 325, 392, 404, 411
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 2 cut(s) 114, 224
SstI GAGCTC 1 cut(s) 383
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 340, 441
TaqI TCGA 1 cut(s) 311
TasI AATT 6 cut(s) 11, 57, 325, 392, 404, 411
TauI GCSGC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 90, 120
Tru9I TTAA 2 cut(s) 90, 120
TseI GCWGC 5 cut(s) 227, 230, 233, 236, 239
TspGWI ACGGA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 3 cut(s) 11, 325, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.