Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

8591750 .. 8594168

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1105900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGGAAAAAGCAGAAGTTGGTTGCGATGTGAAGGTGAAGCTTTCAGAGATGGAAGAAGAAATGGTTGCCCAAAACAAGCCAAACCAGACGGAGGATGATCTGCAGAACACCAGGAAAGTACCATCTGCACTAAACATTACCGGTCCTGCTCCGGCTCAGCTCACCATCTTCTACGCTGGGAGCGTTAGCGTGTTTGACGCCATTACTGCAGAAAAGGTTCGGGAACTTATGCTTATTGCGGCCGCTGCTGCTGCTGATAAGAAGACGAGTGATGTGAAGAATAGCGCGACAAGCTGTCCTCCAAGTCCACTGATTCGCACAGGATCGTCGACGCTGCAAAAATCTTCTACTGCTCCTGGTTCACCAGTGGTCCAGCCCTTCCCTGAGCAGAATAGTTCCATTTGCAAATTGCAAGCTGAATTTCCCATTGCAAGGAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGACGGGACAGGATGGTCAGCAACAGTCCATATCCTACTTCGCCAGCAACACCGAAGGACGACAATGCAAAAACTATCCAGAGCGATAACGCTTCTCCGGGTGTGGGTTGCTTCAAACAATCCGCCATGGTTCAGGAAGAAACTCAACCAAGTTCTGTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

211

Amino Acids

22.6

Weight (kDa)

5.96

Isoelectric Point (pI)

72.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	50 - 82	1e-15	tify domain
Jas_motif	PF09425	143 - 168	5e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	290
AciI	CCGC	3 cut(s)	242, 246, 591
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	3 cut(s)	94, 435, 572
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	583
AhdI	GACNNNNNGTC	1 cut(s)	297
AjnI	CCWGG	3 cut(s)	113, 358, 459
AluBI	AGCT	4 cut(s)	43, 163, 297, 419
AluI	AGCT	4 cut(s)	43, 163, 297, 419
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	4 cut(s)	248, 251, 254, 337
ApoI	RAATTY	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	146, 373
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	3 cut(s)	49, 157, 357
AvaII	GGWCC	2 cut(s)	146, 373
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	235, 238, 241, 324
BccI	CCATC	4 cut(s)	46, 133, 176, 475
BciT130I	CCWGG	3 cut(s)	115, 360, 461
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	631
BfmI	CTRYAG	2 cut(s)	104, 210
BisI	GCNGC	6 cut(s)	243, 246, 249, 252, 255, 338
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	6 cut(s)	244, 247, 250, 253, 256, 339
Bme1390I	CCNGG	4 cut(s)	115, 360, 461, 567
Bme18I	GGWCC	2 cut(s)	146, 373
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	146, 373
BmrFI	CCNGG	4 cut(s)	115, 360, 461, 567
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 435, 572
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	115, 360, 461
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	2 cut(s)	103, 486
BseLI	CCNNNNNNNGG	3 cut(s)	94, 435, 572
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	173, 378
BseNI	ACTGG	1 cut(s)	368
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	235, 238, 241, 324
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	144, 155, 566
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	3 cut(s)	94, 435, 572
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	100, 326
Bsp1720I	GCTNAGC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	3 cut(s)	242, 246, 591
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	2 cut(s)	172, 379
BspFNI	CGCG	1 cut(s)	290
BspMAI	CTGCAG	2 cut(s)	108, 214
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	2 cut(s)	100, 326
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	115, 360, 461
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	417, 513
BstDEI	CTNAG	2 cut(s)	159, 387
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	103, 486
BstFNI	CGCG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	2 cut(s)	103, 329
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	2 cut(s)	100, 326
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 248, 251, 254, 294
BstNI	CCWGG	3 cut(s)	115, 360, 461
BstSCI	CCNGG	4 cut(s)	113, 358, 459, 565
BstSFI	CTRYAG	2 cut(s)	104, 210
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	235, 238, 241, 324
BstV2I	GAAGAC	1 cut(s)	272
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	594
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	103, 486
BtsIMutI	CAGTG	2 cut(s)	311, 375
Cac8I	GCNNGC	2 cut(s)	417, 513
CciNI	GCGGCCGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	146, 373
CseI	GACGC	2 cut(s)	209, 343
Csp6I	GTAC	1 cut(s)	122
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	595
CviJI	RGCY	8 cut(s)	43, 82, 158, 163, 245, 297, 379, 419
CviKI_1	RGCY	8 cut(s)	43, 82, 158, 163, 245, 297, 379, 419
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	159, 387
DpnI	GATC	2 cut(s)	102, 328
DpnII	GATC	2 cut(s)	100, 326
DrdI	GACNNNNNNGTC	1 cut(s)	482
DriI	GACNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	580
EclXI	CGGCCG	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	146, 373
Eco52I	CGGCCG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	434
EcoRII	CCWGG	3 cut(s)	113, 358, 459
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	1 cut(s)	598
FaiI	YATR	3 cut(s)	233, 499, 596
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	6 cut(s)	243, 246, 249, 252, 255, 338
FokI	GGATG	2 cut(s)	110, 493
Fsp4HI	GCNGC	6 cut(s)	243, 246, 249, 252, 255, 338
FspBI	CTAG	1 cut(s)	631
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	6 cut(s)	243, 246, 249, 252, 255, 338
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	3 cut(s)	144, 155, 566
HgaI	GACGC	2 cut(s)	209, 343
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	598
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	3 cut(s)	144, 155, 566
HphI	GGTGA	3 cut(s)	49, 157, 357
Hpy166II	GTNNAC	3 cut(s)	311, 333, 365
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	224, 547, 602
Hpy8I	GTNNAC	3 cut(s)	311, 333, 365
Hpy99I	CGWCG	3 cut(s)	334, 337, 474
HpyAV	CCTTC	3 cut(s)	28, 391, 517
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	8 cut(s)	106, 131, 212, 340, 408, 415, 434, 536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 248, 251, 254, 294
HpyF3I	CTNAG	2 cut(s)	159, 387
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	598
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	100, 326
LmnI	GCTCC	3 cut(s)	157, 183, 361
Lsp1109I	GCAGC	4 cut(s)	235, 238, 241, 324
MaeI	CTAG	1 cut(s)	631
MalI	GATC	2 cut(s)	102, 328
MboI	GATC	2 cut(s)	100, 326
MboII	GAAGA	8 cut(s)	68, 71, 163, 277, 292, 339, 440, 617
MluCI	AATT	2 cut(s)	410, 422
MnlI	CCTC	2 cut(s)	88, 312
MroXI	GAANNNNTTC	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	144, 155, 566
MspR9I	CCNGG	4 cut(s)	115, 360, 461, 567
MvaI	CCWGG	3 cut(s)	115, 360, 461
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	209, 248, 251, 254, 294
NciI	CCSGG	1 cut(s)	567
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	2 cut(s)	100, 326
NlaIII	CATG	1 cut(s)	598
NotI	GCGGCCGC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	6 cut(s)	244, 247, 250, 253, 256, 339
Psp6I	CCWGG	3 cut(s)	113, 358, 459
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	3 cut(s)	113, 358, 459
PspPI	GGNCC	2 cut(s)	146, 373
PstI	CTGCAG	2 cut(s)	108, 214
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	331
SatI	GCNGC	6 cut(s)	243, 246, 249, 252, 255, 338
Sau3AI	GATC	2 cut(s)	100, 326
Sau96I	GGNCC	2 cut(s)	146, 373
ScrFI	CCNGG	4 cut(s)	115, 360, 461, 567
SetI	ASST	6 cut(s)	39, 45, 165, 222, 299, 421
SfcI	CTRYAG	2 cut(s)	104, 210
SgrDI	CGTCGACG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	146, 373
Sse9I	AATT	2 cut(s)	410, 422
SsiI	CCGC	3 cut(s)	242, 246, 591
SspMI	CTAG	1 cut(s)	631
StyD4I	CCNGG	4 cut(s)	113, 358, 459, 565
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	332
TasI	AATT	2 cut(s)	410, 422
TauI	GCSGC	2 cut(s)	245, 248
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	2 cut(s)	318, 375
TseI	GCWGC	4 cut(s)	248, 251, 254, 337
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	318, 375
VpaK11BI	GGWCC	2 cut(s)	146, 373
XapI	RAATTY	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.