RchiOBHm_Chr2g0096551

TIFY 3B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011174
Physical Location & Seq
Forward (+)
9291590 .. 9294020
2431 bp
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UTR
Exon/CDS
Intron
PRQ47146

Sequence Viewer

Length: 621 bp
ATGGCTGAAAAATTTGAGCTTGGTGATGTCAAAGAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTAATGATCTGCCCAACATTAAGAGCAACAGAAACAAGCCATCTGCACTTAATATCCCTGCTCGTTCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTAGCGTCTTTGATGCAGTTACTGCAGAAAAGGTCCGTGAACTTCTTATCGCGGCTGCTGCAGCTGCTGCTGCTGCTGATAAGGTCATTGATGTAAATAATAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCGAGTTCTCTTCAAAATTCTTCTACCGCTCCTGGTTCACCAGTTGTCCAGCTCTACCCTGACCAGAAGAGTTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGAAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGTAGGGACAGATTGGGCAGCAAGAGTCCATACCCTACTTCTCCAGCAACACTGGTGGATGATAATGCAAAGACAAACCTCAGCAATAATGCTTCTTCCGGTTTGGGTTGTTTCAAACAATCTGCCGTGGGTCAGGAACAAATTCAACCAAGTTCTGCGGCCTAG

Protein Analysis

206

Amino Acids

21.84

Weight (kDa)

6.61

Isoelectric Point (pI)

70.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tify PF06200 46 - 76 1.4e-13 tify domain
Jas_motif PF09425 139 - 164 2.1e-14 Jas motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43440 AT3G43440 AT5G20900
fragaria_vesca FvH4_1g09690
malus_domestica MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica Prupe.7G189200_v2.0.a1
pyrus_communis pycom02g08380 pycom15g20070
rosa_chinensis RchiOBHm_Chr2g0096551
rosa_laevigata RLG00000016648
rosa_multiflora Rmu_sc0004096.1_g000006
rosa_roxburghii Rroxscaffold_2G00145540
rosa_rugosa Rorug02G0058400 Rorug02G0058400
rosa_samantha Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana Rw2G008170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 344
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 224, 342, 614
AcsI RAATTY 4 cut(s) 11, 331, 410, 597
AcuI CTGAAG 1 cut(s) 422
AgsI TTSAA 3 cut(s) 329, 571, 602
AjnI CCWGG 2 cut(s) 346, 447
AluBI AGCT 7 cut(s) 19, 50, 148, 236, 285, 367, 407
AluI AGCT 7 cut(s) 19, 50, 148, 236, 285, 367, 407
AlwNI CAGNNNCTG 2 cut(s) 194, 239
AoxI GGCC 2 cut(s) 63, 615
ApeKI GCWGC 8 cut(s) 227, 230, 233, 236, 239, 242, 245, 474
ApoI RAATTY 4 cut(s) 11, 331, 410, 597
Asp700I GAANNNNTTC 1 cut(s) 597
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 35, 345
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 433
BbvCI CCTCAGC 2 cut(s) 51, 536
BbvI GCAGC 8 cut(s) 214, 217, 223, 226, 229, 232, 245, 486
BccI CCATC 2 cut(s) 118, 161
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 2 cut(s) 348, 449
BfaI CTAG 1 cut(s) 619
BfmI CTRYAG 2 cut(s) 195, 231
BlpI GCTNAGC 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 348, 449
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 348, 449
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 433
BpmI CTGGAG 2 cut(s) 470, 483
Bpu10I CCTNAGC 2 cut(s) 51, 536
Bpu1102I GCTNAGC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 582
BsaWI WCCGGW 1 cut(s) 554
Bse1I ACTGG 3 cut(s) 316, 356, 513
BseBI CCWGG 2 cut(s) 348, 449
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 520
BseMII CTCAG 3 cut(s) 42, 158, 550
BseNI ACTGG 3 cut(s) 316, 356, 513
BseXI GCAGC 8 cut(s) 214, 217, 223, 226, 229, 232, 245, 486
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 65, 617
BsiSI CCGG 1 cut(s) 555
BslFI GGGAC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 2 cut(s) 65, 617
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 3 cut(s) 224, 342, 614
BspANI GGCC 2 cut(s) 65, 617
BspCNI CTCAG 3 cut(s) 43, 157, 549
BspFNI CGCG 1 cut(s) 224
BspMAI CTGCAG 2 cut(s) 199, 235
BsrBI CCGCTC 1 cut(s) 344
BsrI ACTGG 3 cut(s) 316, 356, 513
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 348, 449
Bst6I CTCTTC 3 cut(s) 330, 377, 441
BstAPI GCANNNNNTGC 2 cut(s) 194, 239
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 3 cut(s) 51, 144, 536
BstDSI CCRYGG 1 cut(s) 582
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 224
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 7 cut(s) 194, 230, 233, 236, 239, 242, 245
BstNI CCWGG 2 cut(s) 348, 449
BstSCI CCNGG 2 cut(s) 346, 447
BstSFI CTRYAG 2 cut(s) 195, 231
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 8 cut(s) 214, 217, 223, 226, 229, 232, 245, 486
BstV2I GAAGAC 1 cut(s) 433
BsuRI GGCC 2 cut(s) 65, 617
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 405
CaiI CAGNNNCTG 2 cut(s) 194, 239
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
DdeI CTNAG 3 cut(s) 51, 144, 536
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 330, 377, 441
EarI CTCTTC 3 cut(s) 330, 377, 441
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 2 cut(s) 346, 447
EcoT38I GRGCYC 1 cut(s) 39
FaiI YATR 1 cut(s) 487
FaqI GGGAC 1 cut(s) 476
FokI GGATG 1 cut(s) 527
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 1 cut(s) 619
GsuI CTGGAG 2 cut(s) 470, 483
HaeIII GGCC 2 cut(s) 65, 617
HapII CCGG 1 cut(s) 555
HgaI GACGC 1 cut(s) 166
HinfI GANTC 1 cut(s) 481
HpaII CCGG 1 cut(s) 555
HphI GGTGA 2 cut(s) 35, 345
Hpy166II GTNNAC 3 cut(s) 212, 299, 353
Hpy188III TCNNGA 1 cut(s) 590
Hpy8I GTNNAC 3 cut(s) 212, 299, 353
HpyCH4V TGCA 8 cut(s) 116, 188, 197, 233, 396, 403, 422, 524
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 230, 233, 236, 239, 242, 245
HpyF3I CTNAG 3 cut(s) 51, 144, 536
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 8 cut(s) 214, 217, 223, 226, 229, 232, 245, 486
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 619
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 344
MboI GATC 1 cut(s) 76
MboII GAAGA 8 cut(s) 56, 148, 317, 327, 394, 428, 438, 543
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 7 cut(s) 11, 57, 331, 398, 410, 417, 597
MlyI GAGTC 1 cut(s) 490
MnlI CCTC 5 cut(s) 46, 55, 76, 300, 545
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 2 cut(s) 90, 120
MspA1I CMGCKG 2 cut(s) 236, 285
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 348, 449
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 2 cut(s) 348, 449
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 7 cut(s) 194, 230, 233, 236, 239, 242, 245
NdeII GATC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 597
PfoI TCCNGGA 1 cut(s) 447
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 346, 447
PspGI CCWGG 2 cut(s) 346, 447
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 2 cut(s) 199, 235
PstNI CAGNNNCTG 2 cut(s) 194, 239
PvuII CAGCTG 2 cut(s) 236, 285
SaqAI TTAA 2 cut(s) 90, 120
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 348, 449
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 2 cut(s) 195, 231
SinI GGWCC 1 cut(s) 205
Sse9I AATT 7 cut(s) 11, 57, 331, 398, 410, 417, 597
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 3 cut(s) 224, 342, 614
SspMI CTAG 1 cut(s) 619
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 346, 447
TaqI TCGA 1 cut(s) 317
TasI AATT 7 cut(s) 11, 57, 331, 398, 410, 417, 597
TauI GCSGC 2 cut(s) 227, 617
Tru1I TTAA 2 cut(s) 90, 120
Tru9I TTAA 2 cut(s) 90, 120
TscAI CASTG 1 cut(s) 513
TseI GCWGC 8 cut(s) 227, 230, 233, 236, 239, 242, 245, 474
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 4 cut(s) 11, 331, 410, 597
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.