AT3G44020

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011190
Physical Location & Seq
Forward (+)
15801372 .. 15802855
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44020.1

Sequence Viewer

Length: 480 bp
ATGGCCAGTCGACCTCTCATCTCTCTGCAACTTCTTTCTTCTTCTTCTTCATCTTCCTCGTTAAAACCAACAACAAAACTTCTCTTCTTTCATAAACCTGAACTAATTAGCCACCACCATAGAAACCGTAACAAGTTGTCACGGACAAGTGTTCATCAACACTCAGCTAATCTCATCATTCACCCTTCTGTTCTTTTCCTAAGTAGCGCCTTCGATGGCGGTGGAGGATTCATCGATACACAGACTTTTATTGTCACCATTAGTCTCGTTGTAGCCATTGCTCTCTCACTATTCCTCGGCTTCAAGGGAGATCCAGTTCCTTGTGAGAGATGTGGTGGAAACGGCGGAACGAAATGTGTATTTTGCCTAGAAGGGAAGATGAAGGTGGAATCTGGCATGGTTGATTGCAAAGTCTGCAAAGGTTCAGGTTTGATTTTTTGCAAGAAATGTGGAGGTTCCGGATATTCTCGCCGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.06

Weight (kDa)

9.59

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 478
AccI GTMKAC 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 458
AciI CCGC 2 cut(s) 219, 345
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 458
AoxI GGCC 1 cut(s) 3
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 173, 247
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 358, 456
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 457
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bse1I ACTGG 2 cut(s) 6, 314
Bse3DI GCAATG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 6, 314
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 234
BsiSI CCGG 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 458
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 2 cut(s) 219, 345
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 176
BspDI ATCGAT 1 cut(s) 234
BspEI TCCGGA 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 2 cut(s) 6, 314
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 163, 200
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 234
CfoI GCGC 1 cut(s) 209
ClaI ATCGAT 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 1 cut(s) 397
CviJI RGCY 5 cut(s) 5, 111, 167, 275, 300
CviKI_1 RGCY 5 cut(s) 5, 111, 167, 275, 300
DdeI CTNAG 2 cut(s) 163, 200
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 360
FaeI CATG 1 cut(s) 400
FaiI YATR 4 cut(s) 93, 120, 398, 478
FatI CATG 1 cut(s) 396
FblI GTMKAC 1 cut(s) 10
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 459
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 400
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 2 cut(s) 228, 389
HpaII CCGG 1 cut(s) 459
HphI GGTGA 2 cut(s) 173, 247
Hpy166II GTNNAC 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 459
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 195, 220, 365, 376
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 28, 408, 417, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 2 cut(s) 163, 200
Hsp92II CATG 1 cut(s) 400
HspAI GCGC 1 cut(s) 207
Kpn2I TCCGGA 1 cut(s) 458
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 6 cut(s) 19, 111, 327, 378, 411, 472
MaeI CTAG 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 128, 138, 253
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 7 cut(s) 30, 33, 36, 39, 45, 76, 388
MflI RGATCY 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 24, 67, 218, 305, 446
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 458
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 459
MwoI GCNNNNNNNGC 1 cut(s) 414
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 457
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 138, 253
PfeI GAWTC 2 cut(s) 228, 389
PsiI TTATAA 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 310
SalI GTCGAC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 62
Sau3AI GATC 1 cut(s) 310
SetI ASST 7 cut(s) 16, 100, 169, 387, 424, 430, 457
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 219, 345
SspMI CTAG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 10, 213, 234
TasI AATT 1 cut(s) 105
TfiI GAWTC 2 cut(s) 228, 389
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseFI GTSAC 2 cut(s) 138, 253
Tsp45I GTSAC 2 cut(s) 138, 253
TspDTI ATGAA 5 cut(s) 39, 80, 143, 220, 395
TspGWI ACGGA 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.