Rorug05G0246900

thylakoid lumenal P17.1 protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
26588715 .. 26608707
19993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0246900.1

Sequence Viewer

Length: 3270 bp
ATGGCTGCCAAAGCTTCGTGCTTTTTCTGCAAGGCCGAGAGTGATCAGTTCGTTAATGGCTGGGAGCTCAAGGATGGGTCTTTCGCCCAGCTCTGCATGAAATGCGGTTTTGCTTATGTGAATGGTATATTTTGTGAAACTTTTCACATGGAAGCGGAAGGCTGGAGAGACTGTGCTGTTTGCGGGAAGCCACTCCATTGTGGGTGCATTATGTCATGCAACAAGTATGCACCACTGGATTTCGGAGGTGTAGGTTGCTCAAAATGTTTACTAGAAGTTGATCAGTCTATTGCTTCAGGTCAAATGACCAGAATGCTGAAAGAAATAGTTGCCACGTATAAGACAGATCCAACAGTTTCATCTGATCCTACTGAGAAAGTTGTCGAGTCCCTTTCTCCTGGATCTTCACAAGCGCCTGCTCCTCATTTTGGAGAAGAAGCCAATACGGATGCATCTAAAGGAGATACAGCTTGTGAAACCAAAGTAGACAGTGAAACACCTCAAGTGGCTATCTCCACAGGAAACCATTTACACCCTGACAATCTGCCGAAGATGACAAGTGCTGAGCAACTCCAAAAAGTCTCCGGAAACTTAAACTCTGATCTTATACCTCTGTTTGAGAAGTCATCAACCACAAGTGATGCTAATCGTAGTACAGGATGTCTTGTGATACCAAAGAAATACGCAGAGGAACAATCTCCTAGGGACATTGAAACAGGCCCTACGCCTGTAGATACAAGTCTGAAAGTAGACCAGGAACAATCTCCAATGGATATGGAAACAAGTCCAATGCCTATAGTAACAAATCAGAAAACAAACCAGGAACACTCTCCAAGGGACATTGAAACAAGTCCAACACCTGTAGATACAAGTCTGAAAACAGACCAGGAACAACCTCCAAGGGACATTGAAACAGGTCCAACGCCTGTAGATACAAGTGTGAAAACAGACCAGGGACAATCTCCAAGGGATATGGAGACAAGTCCAACTTTTGTAGAAGCAAGTCGGAAATCAGACAAGTTGAGTTGTGATAAGTGTGCCATTGCTTCTAATAGGAACAATCTCAAAGGGATATGGAAACAGGTCCAACACCTGCAGAAACAACCCTTAAAACAGACCAGGCACGAAACAGAACTCATTCCAGCAGTTATTCATAAGATACGGAAACATGTGCCGTCAACACCTGCTTGTCGACGGAGGCATGATGTCTTTCTAAGTTTTAGAGGGAAGGATACCCGCTTGAATTTTACGGACCATCTATATGCTGCATTAATTCAGTGCGGAATTTCCACCTTTAGAGATGACATAGATCTTGAGAAAGGAAAGTCCATTCGCAAACAACTCGACAAAGCAATTGAGGGATCAAAGGTTTGGGTTGTCATCGTTTCACCAGACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTTTTGAAGATTCTTGAATGTAGAAAAGCATCTAAAGTGGGAGGGAAGAATGAAACTTTGATGAAGCCATCTGCAGAATATGAAGAACAAGTTCATACCCTGGTGAATGGAGACAAAACACATAAGGGGATGGCTAGTTTGCGGAACAAGGAAAACATCACTGATCATAATAAAAGGGAAATGGGTGAGTTCAGACTTGGTGTTACCTATGGCGGAAAGTGGGTTGGTTCTGTTTACGTAGGTGGTAGGACAGAAGAAATAGTGGTTTCAGAAGACATTACTTATAATGAGCTTCTAGATCAACTGTATCATATTGTTGGAGTATCTCCAAATGAAAATGAGATCAAGATCAGTACGATTGATGAATCAAAATCACCAGCTTATCCTGTGGAGATAATCAATGATGATGACCTCAAAAATTTTATTGATCAGAGCATTTCTTCTGATATGCACATGAAGCATCCATTGCCAAATTCCTTTGAAAGCAAGAGTATTGAAGTTAGAGTTTTGATTAACCGTGATGGGGAGTGGGTGAATTCCACATATGTCGGTGGCAAAACGAAAGGAATAATAATCTCAGAGGACATTACGTATCAAGAACTTGTTGATAGAGTGTATGGTGTTGTGGGAGTTGATCCAAATGAATATAAGTTGATTCTGAAGACTGCATATAAATCAAATCTACCTACTCAACCTGTGGAGATAATCGATGATGAAGGCCTTGCATTTTTCATCCACGATGAGAATCTTTCACTGGGTATGAGCTCCATATTTACTTTGTGCACTACTCTTGAACGACGGGCATTTCCTAATGGAAGGATGGAGACGTCATCACAAAATAGTACTGCTACGATGGAGTCATCAAAAAGTAATTGTACAACACATCTGAGGAGGTTTGGGACATATCAGAGTTGCATTCCTTCTGTGACACCTGATCAGATGCCTTATCTTCGTACTCAAGTTAGACCGTCGTCACCAAATGTTCCATTGGGAAATTTGGTCTTCACAGACATGGCAAAGGCTGTAACTACAGGGAATATCCTGGAAGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTACTGGACAACAAGCTAATGAAGCTGTTCAAGATCAGTTATCAGCTCTAAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCGTTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTAGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGATAATTGAACTACAGCTGCCATCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGCGTGCAAGCTTATCTAGCTGGACTTACATTTGCTTTAGCAGCCTCTCCATGCAGTACACCAGTGCTGGCCACTCTGCTAGGATATGTAGCTACGTCCAAGGATCCATTTATTGGAGGCAGCCTACTTTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCTTCTTTTGCTGGAGCATTGCAGAGCCTGCTTTCGTTTCGCAAATTTTCAGCATGGATCAACCCAATCAGTGGTGCCCTTCTATTGGGAGGGGGAGTGTATACTTTCTTGGATCGGCTTTTCCCAGCTACTACAATGGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1089

Amino Acids

118.29

Weight (kDa)

5.4

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_VAL1_N PF25813 47 - 91 8.3e-20 VAL1-like, N-terminal zinc finger domain
TIR PF01582 401 - 486 4.6e-29 TIR domain
TIR_2 PF13676 403 - 483 2e-14 TIR domain
DsbD_TM PF02683 867 - 1048 2.4e-22 Cytochrome C biogenesis protein transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1710
AarI CACCTGC 2 cut(s) 1101, 1192
AatII GACGTC 1 cut(s) 2255
Acc36I ACCTGC 2 cut(s) 1101, 1192
AccB1I GGYRCC 2 cut(s) 2618, 3197
AccB7I CCANNNNNTGG 2 cut(s) 3065, 3194
AccI GTMKAC 4 cut(s) 486, 750, 1192, 3224
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 7 cut(s) 105, 155, 183, 1237, 1281, 1567, 1638
AcoI YGGCCR 1 cut(s) 3021
AcsI RAATTY 7 cut(s) 1243, 1284, 1843, 1897, 1960, 2419, 3167
AcuI CTGAAG 4 cut(s) 279, 2105, 2520, 2826
AcyI GRCGYC 1 cut(s) 2252
AfaI GTAC 8 cut(s) 655, 1780, 2269, 2302, 2380, 2650, 3010, 3089
AfiI CCNNNNNNNGG 6 cut(s) 428, 1410, 1948, 3065, 3194, 3208
AflIII ACRYGT 1 cut(s) 1168
AjnI CCWGG 8 cut(s) 397, 753, 819, 885, 951, 1118, 1524, 2466
Alw21I GWGCWC 3 cut(s) 69, 2192, 2210
Alw26I GTCTC 5 cut(s) 162, 586, 971, 1530, 2243
Alw44I GTGCAC 1 cut(s) 2206
AlwNI CAGNNNCTG 2 cut(s) 2837, 3151
Ama87I CYCGRG 1 cut(s) 2925
Aor13HI TCCGGA 1 cut(s) 584
AoxI GGCC 4 cut(s) 33, 718, 2143, 3021
ApaLI GTGCAC 1 cut(s) 2206
ApoI RAATTY 7 cut(s) 1243, 1284, 1843, 1897, 1960, 2419, 3167
AseI ATTAAT 1 cut(s) 1271
Asp700I GAANNNNTTC 4 cut(s) 141, 1137, 1515, 2565
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 4 cut(s) 719, 917, 1084, 1252
AsuC2I CCSGG 3 cut(s) 2623, 2926, 2927
AsuHPI GGTGA 6 cut(s) 1380, 1540, 1622, 1791, 1969, 2391
AvaI CYCGRG 1 cut(s) 2925
AvaII GGWCC 3 cut(s) 917, 1084, 1252
AvrII CCTAGG 1 cut(s) 701
BaeGI GKGCMC 3 cut(s) 2210, 2716, 3202
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BalI TGGCCA 1 cut(s) 3023
BamHI GGATCC 1 cut(s) 3055
BanI GGYRCC 2 cut(s) 2618, 3197
BanII GRGCYC 2 cut(s) 69, 2192
BbsI GAAGAC 3 cut(s) 1704, 2093, 2419
Bbv12I GWGCWC 3 cut(s) 69, 2192, 2210
BccI CCATC 9 cut(s) 68, 1263, 1501, 1549, 1940, 2239, 2272, 2908, 2956
BceAI ACGGC 1 cut(s) 1159
BcgI CGANNNNNNTGC 2 cut(s) 1324, 1358
BciT130I CCWGG 8 cut(s) 399, 755, 821, 887, 953, 1120, 1526, 2468
BciVI GTATCC 1 cut(s) 1225
BclI TGATCA 5 cut(s) 43, 280, 1588, 1852, 2359
BcnI CCSGG 3 cut(s) 2623, 2926, 2927
BcoDI GTCTC 5 cut(s) 162, 586, 971, 1530, 2243
BfaI CTAG 7 cut(s) 272, 702, 1560, 1721, 2634, 2969, 3032
BfmI CTRYAG 8 cut(s) 729, 795, 861, 927, 1094, 1497, 2454, 2891
BfoI RGCGCY 1 cut(s) 416
BfuAI ACCTGC 2 cut(s) 1101, 1192
BfuI GTATCC 1 cut(s) 1225
BglII AGATCT 1 cut(s) 1309
BlnI CCTAGG 1 cut(s) 701
BlpI GCTNAGC 1 cut(s) 564
BmcAI AGTACT 1 cut(s) 2269
Bme18I GGWCC 3 cut(s) 917, 1084, 1252
BmeT110I CYCGRG 1 cut(s) 2925
BmgT120I GGNCC 4 cut(s) 719, 917, 1084, 1252
BmiI GGNNCC 3 cut(s) 2620, 3057, 3199
BmrI ACTGGG 1 cut(s) 2189
BmsI GCATC 6 cut(s) 439, 461, 631, 1463, 1894, 2355
BmuI ACTGGG 1 cut(s) 2189
BoxI GACNNNNGTC 1 cut(s) 2395
BpiI GAAGAC 3 cut(s) 1704, 2093, 2419
BpmI CTGGAG 4 cut(s) 184, 2532, 2581, 3156
Bpu1102I GCTNAGC 1 cut(s) 564
BpuEI CTTGAG 5 cut(s) 53, 486, 1334, 2367, 2897
BpuMI CCSGG 3 cut(s) 2623, 2926, 2927
Bsa29I ATCGAT 1 cut(s) 2133
BsaAI YACGTR 3 cut(s) 336, 1663, 2016
BsaBI GATNNNNATC 3 cut(s) 645, 1772, 2169
BsaHI GRCGYC 1 cut(s) 2252
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 4 cut(s) 157, 187, 3204, 3234
Bsc4I CCNNNNNNNGG 6 cut(s) 428, 1410, 1948, 3065, 3194, 3208
Bse1I ACTGG 7 cut(s) 240, 2184, 2548, 2598, 2831, 3014, 3100
Bse3DI GCAATG 6 cut(s) 1041, 1889, 2493, 2778, 3140, 3270
Bse8I GATNNNNATC 3 cut(s) 645, 1772, 2169
BseAI TCCGGA 1 cut(s) 584
BseBI CCWGG 8 cut(s) 399, 755, 821, 887, 953, 1120, 1526, 2468
BseCI ATCGAT 1 cut(s) 2133
BseGI GGATG 8 cut(s) 79, 454, 665, 1560, 1885, 2157, 2250, 2900
BseJI GATNNNNATC 3 cut(s) 645, 1772, 2169
BseLI CCNNNNNNNGG 6 cut(s) 428, 1410, 1948, 3065, 3194, 3208
BseMI GCAATG 6 cut(s) 1041, 1889, 2493, 2778, 3140, 3270
BseMII CTCAG 4 cut(s) 363, 555, 2016, 2303
BseNI ACTGG 7 cut(s) 240, 2184, 2548, 2598, 2831, 3014, 3100
BseRI GAGGAG 4 cut(s) 411, 2329, 2520, 3099
BseSI GKGCMC 3 cut(s) 2210, 2716, 3202
BseYI CCCAGC 3 cut(s) 60, 87, 3247
BshFI GGCC 4 cut(s) 35, 720, 2145, 3023
BshNI GGYRCC 2 cut(s) 2618, 3197
BshVI ATCGAT 1 cut(s) 2133
BsiHKAI GWGCWC 3 cut(s) 69, 2192, 2210
BsiHKCI CYCGRG 1 cut(s) 2925
BsiSI CCGG 3 cut(s) 585, 2622, 2926
BslFI GGGAC 6 cut(s) 373, 719, 851, 917, 969, 2338
BslI CCNNNNNNNGG 6 cut(s) 428, 1410, 1948, 3065, 3194, 3208
BsmAI GTCTC 5 cut(s) 162, 586, 971, 1530, 2243
BsmBI CGTCTC 1 cut(s) 2243
BsmFI GGGAC 6 cut(s) 373, 719, 851, 917, 969, 2338
BsmI GAATGC 2 cut(s) 318, 2340
BsnI GGCC 4 cut(s) 35, 720, 2145, 3023
BsoBI CYCGRG 1 cut(s) 2925
Bsp1286I GDGCHC 5 cut(s) 69, 2192, 2210, 2716, 3202
Bsp13I TCCGGA 1 cut(s) 584
Bsp1407I TGTACA 1 cut(s) 2300
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 7 cut(s) 105, 155, 183, 1237, 1281, 1567, 1638
BspANI GGCC 4 cut(s) 35, 720, 2145, 3023
BspCNI CTCAG 4 cut(s) 364, 556, 2015, 2304
BspDI ATCGAT 1 cut(s) 2133
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 3 cut(s) 2620, 3057, 3199
BspMAI CTGCAG 2 cut(s) 1098, 1501
BspMI ACCTGC 2 cut(s) 1101, 1192
BspT107I GGYRCC 2 cut(s) 2618, 3197
BsrDI GCAATG 6 cut(s) 1041, 1889, 2493, 2778, 3140, 3270
BsrGI TGTACA 1 cut(s) 2300
BsrI ACTGG 7 cut(s) 240, 2184, 2548, 2598, 2831, 3014, 3100
BssNAI GTATAC 1 cut(s) 3225
BssNI GRCGYC 1 cut(s) 2252
BssT1I CCWWGG 6 cut(s) 701, 833, 899, 965, 2674, 3051
Bst1107I GTATAC 1 cut(s) 3225
Bst2UI CCWGG 8 cut(s) 399, 755, 821, 887, 953, 1120, 1526, 2468
Bst4CI ACNGT 6 cut(s) 173, 355, 491, 1731, 1943, 2394
BstACI GRCGYC 1 cut(s) 2252
BstAPI GCANNNNNTGC 3 cut(s) 102, 1891, 3151
BstAUI TGTACA 1 cut(s) 2300
BstBAI YACGTR 3 cut(s) 336, 1663, 2016
BstC8I GCNNGC 5 cut(s) 417, 2957, 2961, 3021, 3152
BstDEI CTNAG 8 cut(s) 372, 564, 1214, 2002, 2312, 2588, 2654, 2773
BstF5I GGATG 8 cut(s) 79, 454, 665, 1560, 1885, 2157, 2250, 2900
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 1 cut(s) 415
BstMAI GTCTC 5 cut(s) 162, 586, 971, 1530, 2243
BstNI CCWGG 8 cut(s) 399, 755, 821, 887, 953, 1120, 1526, 2468
BstNSI RCATGY 1 cut(s) 1172
BstPAI GACNNNNGTC 1 cut(s) 2395
BstSFI CTRYAG 8 cut(s) 729, 795, 861, 927, 1094, 1497, 2454, 2891
BstSLI GKGCMC 3 cut(s) 2210, 2716, 3202
BstSNI TACGTA 2 cut(s) 1663, 2016
BstV2I GAAGAC 3 cut(s) 1704, 2093, 2419
BstX2I RGATCY 4 cut(s) 346, 401, 1309, 3055
BstYI RGATCY 4 cut(s) 346, 401, 1309, 3055
BstZ17I GTATAC 1 cut(s) 3225
Bsu15I ATCGAT 1 cut(s) 2133
BsuI GTATCC 1 cut(s) 1225
BsuRI GGCC 4 cut(s) 35, 720, 2145, 3023
BsuTUI ATCGAT 1 cut(s) 2133
BtsCI GGATG 8 cut(s) 79, 454, 665, 1560, 1885, 2157, 2250, 2900
BtsIMutI CAGTG 8 cut(s) 233, 496, 1283, 1584, 2177, 2666, 3021, 3199
BveI ACCTGC 2 cut(s) 1101, 1192
Cac8I GCNNGC 5 cut(s) 417, 2957, 2961, 3021, 3152
CaiI CAGNNNCTG 2 cut(s) 2837, 3151
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 4 cut(s) 719, 917, 1084, 1252
Cfr9I CCCGGG 1 cut(s) 2925
ClaI ATCGAT 1 cut(s) 2133
Csp6I GTAC 8 cut(s) 654, 1779, 2268, 2301, 2379, 2649, 3009, 3088
CviAII CATG 9 cut(s) 97, 148, 216, 1169, 1202, 1879, 2437, 3003, 3177
CviQI GTAC 8 cut(s) 654, 1779, 2268, 2301, 2379, 2649, 3009, 3088
DdeI CTNAG 8 cut(s) 372, 564, 1214, 2002, 2312, 2588, 2654, 2773
EaeI YGGCCR 1 cut(s) 3021
EciI GGCGGA 1 cut(s) 1653
Ecl136II GAGCTC 2 cut(s) 67, 2190
Eco105I TACGTA 2 cut(s) 1663, 2016
Eco130I CCWWGG 6 cut(s) 701, 833, 899, 965, 2674, 3051
Eco147I AGGCCT 1 cut(s) 2145
Eco24I GRGCYC 2 cut(s) 69, 2192
Eco47I GGWCC 3 cut(s) 917, 1084, 1252
Eco53kI GAGCTC 2 cut(s) 67, 2190
Eco57I CTGAAG 4 cut(s) 279, 2105, 2520, 2826
Eco88I CYCGRG 1 cut(s) 2925
EcoICRI GAGCTC 2 cut(s) 67, 2190
EcoO109I RGGNCCY 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 1960
EcoRII CCWGG 8 cut(s) 397, 753, 819, 885, 951, 1118, 1524, 2466
EcoT14I CCWWGG 6 cut(s) 701, 833, 899, 965, 2674, 3051
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 2 cut(s) 69, 2192
ErhI CCWWGG 6 cut(s) 701, 833, 899, 965, 2674, 3051
Esp3I CGTCTC 1 cut(s) 2243
FaeI CATG 9 cut(s) 100, 151, 219, 1172, 1205, 1882, 2440, 3006, 3180
FalI AAGNNNNNCTT 2 cut(s) 973, 1005
FaqI GGGAC 6 cut(s) 373, 719, 851, 917, 969, 2338
FatI CATG 9 cut(s) 96, 147, 215, 1168, 1201, 1878, 2436, 3002, 3176
FauI CCCGC 2 cut(s) 176, 1244
FauNDI CATATG 2 cut(s) 1969, 2806
FbaI TGATCA 5 cut(s) 43, 280, 1588, 1852, 2359
FblI GTMKAC 4 cut(s) 486, 750, 1192, 3224
FokI GGATG 8 cut(s) 86, 461, 672, 1567, 1872, 2144, 2257, 2887
FriOI GRGCYC 2 cut(s) 69, 2192
FspBI CTAG 7 cut(s) 272, 702, 1560, 1721, 2634, 2969, 3032
GlaI GCGC 1 cut(s) 414
GsaI CCCAGC 3 cut(s) 64, 91, 3251
GsuI CTGGAG 4 cut(s) 184, 2532, 2581, 3156
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 4 cut(s) 35, 720, 2145, 3023
HapII CCGG 3 cut(s) 585, 2622, 2926
HhaI GCGC 1 cut(s) 415
Hin1I GRCGYC 1 cut(s) 2252
Hin1II CATG 9 cut(s) 100, 151, 219, 1172, 1205, 1882, 2440, 3006, 3180
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HincII GTYRAC 2 cut(s) 1179, 1193
HindII GTYRAC 2 cut(s) 1179, 1193
HindIII AAGCTT 2 cut(s) 12, 2961
HinfI GANTC 8 cut(s) 386, 1435, 1790, 2080, 2170, 2282, 2729, 2869
HpaII CCGG 3 cut(s) 585, 2622, 2926
HphI GGTGA 6 cut(s) 1380, 1540, 1622, 1791, 1969, 2391
Hpy188III TCNNGA 8 cut(s) 585, 1313, 1439, 1721, 1771, 2021, 2216, 2570
Hpy99I CGWCG 3 cut(s) 1197, 2226, 2398
HpyAV CCTTC 8 cut(s) 152, 1222, 2135, 2235, 2355, 2465, 2495, 3212
HpyCH4III ACNGT 6 cut(s) 173, 355, 491, 1731, 1943, 2394
HpyCH4IV ACGT 6 cut(s) 335, 1662, 2015, 2252, 3047, 3086
HpyF3I CTNAG 8 cut(s) 372, 564, 1214, 2002, 2312, 2588, 2654, 2773
HpySE526I ACGT 6 cut(s) 335, 1662, 2015, 2252, 3047, 3086
Hsp92I GRCGYC 1 cut(s) 2252
Hsp92II CATG 9 cut(s) 100, 151, 219, 1172, 1205, 1882, 2440, 3006, 3180
HspAI GCGC 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 584
Ksp22I TGATCA 5 cut(s) 43, 280, 1588, 1852, 2359
LmnI GCTCC 7 cut(s) 64, 424, 2195, 2507, 2687, 3112, 3137
LweI GCATC 6 cut(s) 439, 461, 631, 1463, 1894, 2355
MaeI CTAG 7 cut(s) 272, 702, 1560, 1721, 2634, 2969, 3032
MaeII ACGT 6 cut(s) 335, 1662, 2015, 2252, 3047, 3086
MaeIII GTNAC 7 cut(s) 799, 1627, 2350, 2397, 2449, 2629, 2678
MfeI CAATTG 2 cut(s) 1353, 2733
MflI RGATCY 4 cut(s) 346, 401, 1309, 3055
MhlI GDGCHC 5 cut(s) 69, 2192, 2210, 2716, 3202
MlsI TGGCCA 1 cut(s) 3023
MluNI TGGCCA 1 cut(s) 3023
MlyI GAGTC 2 cut(s) 395, 2291
MmeI TCCRAC 7 cut(s) 374, 878, 944, 986, 1010, 1111, 1723
Mox20I TGGCCA 1 cut(s) 3023
Mph1103I ATGCAT 1 cut(s) 454
MroI TCCGGA 1 cut(s) 584
MroXI GAANNNNTTC 4 cut(s) 141, 1137, 1515, 2565
MscI TGGCCA 1 cut(s) 3023
MseI TTAA 5 cut(s) 54, 593, 1109, 1271, 1938
MslI CAYNNNNRTG 2 cut(s) 1260, 2435
Msp20I TGGCCA 1 cut(s) 3023
MspA1I CMGCKG 1 cut(s) 2896
MspI CCGG 3 cut(s) 585, 2622, 2926
MunI CAATTG 2 cut(s) 1353, 2733
Mva1269I GAATGC 2 cut(s) 318, 2340
MvaI CCWGG 8 cut(s) 399, 755, 821, 887, 953, 1120, 1526, 2468
NciI CCSGG 3 cut(s) 2623, 2926, 2927
NdeI CATATG 2 cut(s) 1969, 2806
NlaIII CATG 9 cut(s) 100, 151, 219, 1172, 1205, 1882, 2440, 3006, 3180
NlaIV GGNNCC 3 cut(s) 2620, 3057, 3199
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 2350, 2397
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 1 cut(s) 1172
PaqCI CACCTGC 2 cut(s) 1101, 1192
PceI AGGCCT 1 cut(s) 2145
PciI ACATGT 1 cut(s) 1168
PctI GAATGC 2 cut(s) 318, 2340
PdmI GAANNNNTTC 4 cut(s) 141, 1137, 1515, 2565
PfeI GAWTC 6 cut(s) 1435, 1790, 2080, 2170, 2729, 2869
PflMI CCANNNNNTGG 2 cut(s) 3065, 3194
PfoI TCCNGGA 2 cut(s) 397, 2466
PleI GAGTC 2 cut(s) 394, 2290
PpsI GAGTC 2 cut(s) 394, 2290
Ppu21I YACGTR 3 cut(s) 336, 1663, 2016
PscI ACATGT 1 cut(s) 1168
PshAI GACNNNNGTC 1 cut(s) 2395
PshBI ATTAAT 1 cut(s) 1271
PsiI TTATAA 1 cut(s) 1710
Psp124BI GAGCTC 2 cut(s) 69, 2192
Psp6I CCWGG 8 cut(s) 397, 753, 819, 885, 951, 1118, 1524, 2466
PspFI CCCAGC 3 cut(s) 60, 87, 3247
PspGI CCWGG 8 cut(s) 397, 753, 819, 885, 951, 1118, 1524, 2466
PspN4I GGNNCC 3 cut(s) 2620, 3057, 3199
PspPI GGNCC 4 cut(s) 719, 917, 1084, 1252
PstI CTGCAG 2 cut(s) 1098, 1501
PstNI CAGNNNCTG 2 cut(s) 2837, 3151
PsuI RGATCY 4 cut(s) 346, 401, 1309, 3055
PvuII CAGCTG 1 cut(s) 2896
RsaI GTAC 8 cut(s) 655, 1780, 2269, 2302, 2380, 2650, 3010, 3089
RsaNI GTAC 8 cut(s) 654, 1779, 2268, 2301, 2379, 2649, 3009, 3088
RseI CAYNNNNRTG 2 cut(s) 1260, 2435
SacI GAGCTC 2 cut(s) 69, 2192
SalI GTCGAC 1 cut(s) 1191
SaqAI TTAA 5 cut(s) 54, 593, 1109, 1271, 1938
Sau96I GGNCC 4 cut(s) 719, 917, 1084, 1252
ScaI AGTACT 1 cut(s) 2269
SchI GAGTC 2 cut(s) 395, 2291
SduI GDGCHC 5 cut(s) 69, 2192, 2210, 2716, 3202
SfaNI GCATC 6 cut(s) 439, 461, 631, 1463, 1894, 2355
SfcI CTRYAG 8 cut(s) 729, 795, 861, 927, 1094, 1497, 2454, 2891
SinI GGWCC 3 cut(s) 917, 1084, 1252
SmaI CCCGGG 1 cut(s) 2927
SmiMI CAYNNNNRTG 2 cut(s) 1260, 2435
SmlI CTYRAG 5 cut(s) 68, 501, 1313, 2382, 2876
SmoI CTYRAG 5 cut(s) 68, 501, 1313, 2382, 2876
SnaBI TACGTA 2 cut(s) 1663, 2016
SseBI AGGCCT 1 cut(s) 2145
SsiI CCGC 7 cut(s) 105, 155, 183, 1237, 1281, 1567, 1638
SspMI CTAG 7 cut(s) 272, 702, 1560, 1721, 2634, 2969, 3032
SstI GAGCTC 2 cut(s) 69, 2192
StuI AGGCCT 1 cut(s) 2145
StyI CCWWGG 6 cut(s) 701, 833, 899, 965, 2674, 3051
TaaI ACNGT 6 cut(s) 173, 355, 491, 1731, 1943, 2394
TaiI ACGT 6 cut(s) 338, 1665, 2018, 2255, 3050, 3089
TaqI TCGA 4 cut(s) 384, 1192, 1344, 2133
TatI WGTACW 5 cut(s) 653, 2267, 2300, 2648, 3008
TfiI GAWTC 6 cut(s) 1435, 1790, 2080, 2170, 2729, 2869
Tru1I TTAA 5 cut(s) 54, 593, 1109, 1271, 1938
Tru9I TTAA 5 cut(s) 54, 593, 1109, 1271, 1938
TscAI CASTG 8 cut(s) 240, 496, 1283, 1591, 2184, 2673, 3021, 3199
TseFI GTSAC 2 cut(s) 2350, 2397
Tsp45I GTSAC 2 cut(s) 2350, 2397
TspGWI ACGGA 4 cut(s) 461, 1177, 1210, 1265
TspMI CCCGGG 1 cut(s) 2925
TspRI CASTG 8 cut(s) 240, 496, 1283, 1591, 2184, 2673, 3021, 3199
Van91I CCANNNNNTGG 2 cut(s) 3065, 3194
VneI GTGCAC 1 cut(s) 2206
VpaK11BI GGWCC 3 cut(s) 917, 1084, 1252
VspI ATTAAT 1 cut(s) 1271
XapI RAATTY 7 cut(s) 1243, 1284, 1843, 1897, 1960, 2419, 3167
XbaI TCTAGA 1 cut(s) 1720
XceI RCATGY 1 cut(s) 1172
XmaI CCCGGG 1 cut(s) 2925
XmaJI CCTAGG 1 cut(s) 701
XmiI GTMKAC 4 cut(s) 486, 750, 1192, 3224
XmnI GAANNNNTTC 4 cut(s) 141, 1137, 1515, 2565
XspI CTAG 7 cut(s) 272, 702, 1560, 1721, 2634, 2969, 3032
ZraI GACGTC 1 cut(s) 2253
ZrmI AGTACT 1 cut(s) 2269
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.