Prupe.6G149200_v2.0.a1

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011190
Physical Location & Seq
Reverse (-)
12640257 .. 12643234
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G149200.2

Sequence Viewer

Length: 477 bp
ATGGCCACACTTTCCTGCTACTCTCTGCATCCTCTTGCTTCTGCTTCTTCTTCTTCAACAACGTCTCTCACTGCCAATCACTCTCTTCCATATCAACCCCAAACAAAACCTGAAATCCCTTTACTGTTCCGCTGCTCTGCCACAAGTGCCGCTAGGCCTGAAGTCATAATTCAACCCACAAGGCTCTTTGTCCAGCCCATTCTACTATTTGCTGGCTTTGACAAACCCTTGGATACCCAAACTTTTCTTGCTACTATAAGTGTCTTGGCTGCCATTGCTCTCTCTCTCTTTCTTGGTCTTAAGGGTGACCCTGTGCCTTGTGAGAGATGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAGCAATGGTAAAATGAAGATGGAGACAGGCTTGATTGATTGCAAGGTGTGCAAGGGTGCAGGATTGGTACTCTGCAAGAAGTGTGCAGGTTCTGGATATTCTCGACGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.7

Weight (kDa)

9.1

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 440
AciI CCGC 2 cut(s) 130, 150
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 2 cut(s) 346, 432
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 57, 173
Alw26I GTCTC 2 cut(s) 69, 380
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 2 cut(s) 3, 155
ApeKI GCWGC 2 cut(s) 132, 269
AsuHPI GGTGA 1 cut(s) 317
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 119, 256
BccI CCATC 1 cut(s) 376
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 69, 380
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 440
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 3 cut(s) 133, 150, 270
BlsI GCNGC 3 cut(s) 134, 151, 271
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 228
Bse3DI GCAATG 3 cut(s) 273, 343, 373
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 3 cut(s) 273, 343, 373
BseXI GCAGC 2 cut(s) 119, 256
BsgI GTGCAG 2 cut(s) 441, 468
BshFI GGCC 2 cut(s) 5, 157
BsmAI GTCTC 2 cut(s) 69, 380
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 2 cut(s) 5, 157
BspACI CCGC 2 cut(s) 130, 150
BspANI GGCC 2 cut(s) 5, 157
BspMI ACCTGC 1 cut(s) 440
BspTI CTTAAG 1 cut(s) 299
BsrDI GCAATG 3 cut(s) 273, 343, 373
BssECI CCNNGG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 214, 334
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 69, 380
BstMWI GCNNNNNNNGC 3 cut(s) 146, 275, 411
BstPI GGTNACC 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 119, 256
BstV2I GAAGAC 1 cut(s) 349
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 5, 157
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 2 cut(s) 214, 334
CaiI CAGNNNCTG 1 cut(s) 455
Csp6I GTAC 2 cut(s) 345, 431
CviJI RGCY 8 cut(s) 5, 157, 184, 196, 216, 269, 393, 472
CviKI_1 RGCY 8 cut(s) 5, 157, 184, 196, 216, 269, 393, 472
CviQI GTAC 2 cut(s) 345, 431
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 228
Eco147I AGGCCT 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 69
FaiI YATR 4 cut(s) 91, 167, 257, 475
Fnu4HI GCNGC 3 cut(s) 133, 150, 270
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 133, 150, 270
FspBI CTAG 1 cut(s) 153
GluI GCNGC 3 cut(s) 133, 150, 270
HaeIII GGCC 2 cut(s) 5, 157
HphI GGTGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 456, 465
Hpy99I CGWCG 1 cut(s) 471
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 6 cut(s) 28, 405, 414, 422, 438, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 275, 411
HpySE526I ACGT 1 cut(s) 62
Lsp1109I GCAGC 2 cut(s) 119, 256
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 153
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 305
MboII GAAGA 6 cut(s) 39, 42, 45, 77, 349, 391
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 146, 275, 411
NmuCI GTSAC 1 cut(s) 305
PceI AGGCCT 1 cut(s) 157
PkrI GCNGC 3 cut(s) 134, 151, 271
PspEI GGTNACC 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 346, 432
RsaNI GTAC 2 cut(s) 345, 431
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 133, 150, 270
SetI ASST 4 cut(s) 65, 112, 411, 454
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 168
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 2 cut(s) 130, 150
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 157
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 466
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 152
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 132, 269
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 1 cut(s) 76
Vha464I CTTAAG 1 cut(s) 299
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.