Rorug05G0247000

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011190
Physical Location & Seq
Forward (+)
26618897 .. 26623399
4503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0247000.1

Sequence Viewer

Length: 849 bp
ATGGCTATGGGTCATTCTCCCTCCCTTTCGCTCTCACCATCTCACCAGCCTATCGAGAGTGAAATCGATACACTCTCACTCTCACTCTCAGTCCCAATCTCTCTCACTCTCGCTCTCACCTCTCACCTCTCACCTCTCACTTTCGCTCTCACTCTCTCTCTCCGCCGGCCCAGCTCGAAGTCTCTACTTGGTCCGGTAGTTTACTCTCTCCGCCGCCTCAGCTCGAAGTCGCCGAAGCTTAAGACCGCCTCAGCTCCGAACGTGAATTGGGTGGTGTTCGGGAGGTCCAAGGGTAAAGACTCCACTTCTTGTTCAGGGTATGAAGATGGAAACACAATTTTGAGAAAAGTATCTTCAGCCGCTGACTTCATTTGCTCTGAGGATCCTCTAAATATTCTTGGATCTGTTACTTCCATAACATTTGATGATGTGACATCTTTGCTCATCAAGGATTATTTCTTTTTCTTTCCTTTGTGGCTGGTGCAGATAAGAAGGGCCTTATCTCTTTCTGAGAAAGCTGATGTTACTACTGCCCCAGATGTTGAAAAGGGGAATAAGGAGGATGATGATGACAGAATACTGAATGAAATGGAAGAGATTACAAACACTATGGAGCGCAAGAAGAAACGGGAAAAAAAGCTTCAAGCAAAGAAACGTGCTCAGGGCAGTCTATCTTTAATTAGCTATGCTAACAATGAAGATCAAGTCTCAAAACACAATGGCCAACTACAATCCAACTCTGCTGGAAAGAGCAACACAATCCCCGATATATATATAGTTCTCAGGCAAAGGATTGAACACTTGGTCTTCTATCAACAAAATAGAAAGAAACAAATGTTTAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.44

Weight (kDa)

9.3

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3381 PF11861 100 - 145 6.8e-10 Ribosomal RNA methyltransferase Spb1, DUF3381
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 163, 211, 214, 246, 360
AclWI GGATC 3 cut(s) 377, 390, 409
AcoI YGGCCR 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 339
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 545, 644, 797
AluBI AGCT 7 cut(s) 174, 222, 238, 254, 518, 640, 684
AluI AGCT 7 cut(s) 174, 222, 238, 254, 518, 640, 684
Alw21I GWGCWC 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 186, 712
AlwI GGATC 3 cut(s) 377, 390, 409
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 167, 495, 721
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 4 cut(s) 168, 191, 285, 495
AsuHPI GGTGA 5 cut(s) 27, 35, 109, 116, 123
AvaII GGWCC 2 cut(s) 191, 285
BalI TGGCCA 1 cut(s) 723
BamHI GGATCC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 799
Bbv12I GWGCWC 1 cut(s) 661
BbvCI CCTCAGC 2 cut(s) 218, 250
BccI CCATC 2 cut(s) 46, 320
BcoDI GTCTC 2 cut(s) 186, 712
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 214, 360
BlsI GCNGC 2 cut(s) 215, 361
Bme18I GGWCC 2 cut(s) 191, 285
BmgT120I GGNCC 4 cut(s) 168, 191, 285, 495
BmiI GGNNCC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 799
Bpu10I CCTNAGC 3 cut(s) 218, 250, 660
Bsa29I ATCGAT 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 568
BseMII CTCAG 7 cut(s) 102, 232, 264, 369, 501, 674, 796
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 3 cut(s) 169, 497, 723
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 661
BsiSI CCGG 2 cut(s) 166, 194
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 186, 712
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 3 cut(s) 169, 497, 723
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 3 cut(s) 382, 401, 700
BspACI CCGC 5 cut(s) 163, 211, 214, 246, 360
BspANI GGCC 3 cut(s) 169, 497, 723
BspCNI CTCAG 7 cut(s) 101, 231, 263, 370, 502, 673, 795
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 384
BspPI GGATC 3 cut(s) 377, 390, 409
BspTI CTTAAG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 3 cut(s) 382, 401, 700
BssT1I CCWWGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 588
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 7 cut(s) 88, 218, 250, 378, 510, 660, 782
BstF5I GGATG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 3 cut(s) 385, 404, 703
BstMAI GTCTC 2 cut(s) 186, 712
BstMBI GATC 3 cut(s) 382, 401, 700
BstMWI GCNNNNNNNGC 2 cut(s) 171, 219
BstV2I GAAGAC 1 cut(s) 799
BstX2I RGATCY 2 cut(s) 382, 401
BstYI RGATCY 2 cut(s) 382, 401
Bsu15I ATCGAT 1 cut(s) 66
BsuRI GGCC 3 cut(s) 169, 497, 723
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 618
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 4 cut(s) 168, 191, 285, 495
ClaI ATCGAT 1 cut(s) 66
DdeI CTNAG 7 cut(s) 88, 218, 250, 378, 510, 660, 782
DpnI GATC 3 cut(s) 384, 403, 702
DpnII GATC 3 cut(s) 382, 401, 700
EaeI YGGCCR 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 2 cut(s) 152, 200
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 191, 285
Eco57I CTGAAG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaiI YATR 9 cut(s) 8, 321, 416, 611, 687, 770, 772, 774, 776
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 214, 360
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 2 cut(s) 214, 360
GlaI GCGC 1 cut(s) 617
GluI GCNGC 2 cut(s) 214, 360
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 3 cut(s) 169, 497, 723
HapII CCGG 2 cut(s) 166, 194
HhaI GCGC 1 cut(s) 618
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HindIII AAGCTT 2 cut(s) 236, 638
HinfI GANTC 1 cut(s) 299
HpaII CCGG 2 cut(s) 166, 194
HphI GGTGA 5 cut(s) 27, 35, 109, 116, 123
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 258, 379, 511
Hpy188III TCNNGA 2 cut(s) 55, 280
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 486
HpyCH4IV ACGT 2 cut(s) 261, 655
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 219
HpyF3I CTNAG 7 cut(s) 88, 218, 250, 378, 510, 660, 782
HpySE526I ACGT 2 cut(s) 261, 655
HspAI GCGC 1 cut(s) 616
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 382, 401, 700
LmnI GCTCC 2 cut(s) 259, 613
MaeII ACGT 2 cut(s) 261, 655
MaeIII GTNAC 3 cut(s) 406, 430, 523
MalI GATC 3 cut(s) 384, 403, 702
MboI GATC 3 cut(s) 382, 401, 700
MboII GAAGA 6 cut(s) 335, 345, 605, 634, 710, 799
MflI RGATCY 2 cut(s) 382, 401
MhlI GDGCHC 1 cut(s) 661
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 3 cut(s) 265, 336, 678
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 759
Mox20I TGGCCA 1 cut(s) 723
MroNI GCCGGC 1 cut(s) 165
MscI TGGCCA 1 cut(s) 723
MseI TTAA 3 cut(s) 240, 677, 840
Msp20I TGGCCA 1 cut(s) 723
MspA1I CMGCKG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 2 cut(s) 166, 194
MwoI GCNNNNNNNGC 2 cut(s) 171, 219
NaeI GCCGGC 1 cut(s) 167
NdeII GATC 3 cut(s) 382, 401, 700
NgoMIV GCCGGC 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 215, 361
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 4 cut(s) 168, 191, 285, 495
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 382, 401
SaqAI TTAA 3 cut(s) 240, 677, 840
SatI GCNGC 2 cut(s) 214, 360
Sau3AI GATC 3 cut(s) 382, 401, 700
Sau96I GGNCC 4 cut(s) 168, 191, 285, 495
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 661
SinI GGWCC 2 cut(s) 191, 285
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 265, 336, 678
SsiI CCGC 5 cut(s) 163, 211, 214, 246, 360
SspI AATATT 1 cut(s) 394
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 2 cut(s) 264, 658
TaqI TCGA 4 cut(s) 54, 66, 176, 224
TasI AATT 3 cut(s) 265, 336, 678
TauI GCSGC 2 cut(s) 216, 362
Tru1I TTAA 3 cut(s) 240, 677, 840
Tru9I TTAA 3 cut(s) 240, 677, 840
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 4 cut(s) 336, 358, 600, 711
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 191, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.