Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011190

Physical Location & Seq

Genomic Coordinates Reverse (-)

45930314 .. 45933272

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCACACTTTCCTGCTCCTACTCTCTTCATCCTCTTTCTTCTTCTTCTTCTTCTTTTTCAACGTCTCTCACTCTCCCGCAACATCAACAACAGCAGACCGAATTCCCAACAAGACCTGAATTCCCATTACTGCTGTTCCGCTGCTCTGCCTCTCTTAAACCCGAAGTCATTATAGAACCAACAAGCAGGCTCTTTCTCCAACCCATTCTCCTTTTAACTACTGGCTTTAACACACCCTTGGACACCCAAACCTTTCTTGCCACTATCAGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGTGACCCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGCAAAGTGTGCAAGGGCGCAGATGAAATCTATCTTTGTAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGAACTGGGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.99

Weight (kDa)

7.48

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44020
fragaria_vesca	FvH4_3g26920
malus_domestica	MD03G1161000.v1.1 MD11G1177000.v1.1
prunus_persica	Prupe.6G149200_v2.0.a1 Prupe.6G149200_v2.0.a1
pyrus_communis	pycom03g11330 pycom11g15100
rosa_chinensis	RchiOBHm_Chr5g0049271
rosa_laevigata	RLG00000034609
rosa_multiflora	Rmu_sc0005358.1_g000011 Rmu_sc0009674.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032390
rosa_rugosa	Rorug05G0246900 Rorug05G0247000 Rorug05G0247100
rosa_samantha	Rh5BG334800 Rh5DG346900 Rh7BG059700
rosa_wichuraiana	Rw5G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AciI	CCGC	3 cut(s)	80, 142, 281
AcoI	YGGCCR	2 cut(s)	3, 282
AcsI	RAATTY	2 cut(s)	104, 122
AfaI	GTAC	2 cut(s)	358, 463
AflII	CTTAAG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	486
AoxI	GGCC	2 cut(s)	3, 282
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	2 cut(s)	104, 122
AspLEI	GCGC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	2 cut(s)	145, 282
BlsI	GCNGC	2 cut(s)	146, 283
BmrI	ACTGGG	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	2 cut(s)	229, 515
Bse3DI	GCAATG	2 cut(s)	285, 355
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	285, 355
BseNI	ACTGG	2 cut(s)	229, 515
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	5, 284
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	5, 284
BspACI	CCGC	3 cut(s)	80, 142, 281
BspANI	GGCC	2 cut(s)	5, 284
BspMI	ACCTGC	1 cut(s)	471
BspTI	CTTAAG	1 cut(s)	311
BsrDI	GCAATG	2 cut(s)	285, 355
BsrI	ACTGG	2 cut(s)	229, 515
BssECI	CCNNGG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	191, 346
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	434
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 423
BstPI	GGTNACC	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	5, 284
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	191, 346
CaiI	CAGNNNCTG	1 cut(s)	486
CfoI	GCGC	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	357, 462
CviJI	RGCY	6 cut(s)	5, 193, 228, 284, 394, 405
CviKI_1	RGCY	6 cut(s)	5, 193, 228, 284, 394, 405
CviQI	GTAC	2 cut(s)	357, 462
EaeI	YGGCCR	2 cut(s)	3, 282
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRI	GAATTC	2 cut(s)	104, 122
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	72
FaiI	YATR	1 cut(s)	176
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	145, 282
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	145, 282
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	145, 282
HaeIII	GGCC	2 cut(s)	5, 284
HhaI	GCGC	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188III	TCNNGA	2 cut(s)	487, 496
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	417, 426, 469, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 423
HpySE526I	ACGT	1 cut(s)	65
HspAI	GCGC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	317, 374
MboII	GAAGA	7 cut(s)	20, 33, 36, 39, 42, 45, 361
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	104, 122
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	45, 163, 308, 330
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	159, 218, 231, 312
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	287, 423
NmuCI	GTSAC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	146, 283
PspEI	GGTNACC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	486
RsaI	GTAC	2 cut(s)	358, 463
RsaNI	GTAC	2 cut(s)	357, 462
SaqAI	TTAA	4 cut(s)	159, 218, 231, 312
SatI	GCNGC	2 cut(s)	145, 282
SetI	ASST	6 cut(s)	68, 121, 257, 341, 396, 485
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	104, 122
SsiI	CCGC	3 cut(s)	80, 142, 281
SspMI	CTAG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	497
TaqII	GACCGA	2 cut(s)	116, 296
TasI	AATT	2 cut(s)	104, 122
TauI	GCSGC	1 cut(s)	284
Tru1I	TTAA	4 cut(s)	159, 218, 231, 312
Tru9I	TTAA	4 cut(s)	159, 218, 231, 312
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	20, 404, 453
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	2 cut(s)	104, 122
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.