Rw5G030610

thylakoid lumenal P17.1 protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
48638129 .. 48641379
3251 bp
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UTR
Exon/CDS
Intron
Rw5G030610.1

Sequence Viewer

Length: 387 bp
ATGGCCACACTTTCCTGCTCCTACTCTCTTCATCCTCTTTCTTCTTCTTCTTCTTCTTTTTCAACGTCTCTCACTCTCCCGCAACATCAACAACAGCAGACCGAATTCCCAACAAGACCTGAATTCCCATTACTGCTGTTCCGCTGCTCCGCCTCTCTTAAACCCGAAGTCATTATAGAACCAACAAGCAGGCTCTTTCTCCAACCCATTCTCCTTTTAACTACTGGCTTTAACACACCCTTGGACACCCAAACCTTTCTTGCCACTATCAGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGTGACCCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTAACAACTTTCTCAACCCTTTAATTTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.98

Weight (kDa)

6.03

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 80, 142, 150, 281
AcoI YGGCCR 2 cut(s) 3, 282
AcsI RAATTY 2 cut(s) 104, 122
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 2 cut(s) 3, 282
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 104, 122
AsuHPI GGTGA 1 cut(s) 329
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BcoDI GTCTC 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 145, 282
BlsI GCNGC 2 cut(s) 146, 283
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 285, 355
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 31
BseMI GCAATG 2 cut(s) 285, 355
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 5, 284
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 5, 284
BspACI CCGC 4 cut(s) 80, 142, 150, 281
BspANI GGCC 2 cut(s) 5, 284
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 2 cut(s) 285, 355
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 191, 346
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 5, 284
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 191, 346
CviJI RGCY 4 cut(s) 5, 193, 228, 284
CviKI_1 RGCY 4 cut(s) 5, 193, 228, 284
EaeI YGGCCR 2 cut(s) 3, 282
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 317
EcoRI GAATTC 2 cut(s) 104, 122
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 72
FaiI YATR 1 cut(s) 176
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 145, 282
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 145, 282
GluI GCNGC 2 cut(s) 145, 282
HaeIII GGCC 2 cut(s) 5, 284
HphI GGTGA 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 65
LmnI GCTCC 2 cut(s) 23, 152
LpnPI CCDG 6 cut(s) 28, 132, 175, 210, 330, 336
Lsp1109I GCAGC 1 cut(s) 131
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 317, 353
MboII GAAGA 6 cut(s) 20, 33, 36, 39, 42, 45
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 104, 122, 375
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 4 cut(s) 45, 163, 308, 330
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 6 cut(s) 159, 218, 231, 312, 374, 385
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 146, 283
PspEI GGTNACC 1 cut(s) 317
SaqAI TTAA 6 cut(s) 159, 218, 231, 312, 374, 385
SatI GCNGC 2 cut(s) 145, 282
SetI ASST 4 cut(s) 68, 121, 257, 341
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 3 cut(s) 104, 122, 375
SsiI CCGC 4 cut(s) 80, 142, 150, 281
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 68
TaqII GACCGA 2 cut(s) 116, 296
TasI AATT 3 cut(s) 104, 122, 375
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 6 cut(s) 159, 218, 231, 312, 374, 385
Tru9I TTAA 6 cut(s) 159, 218, 231, 312, 374, 385
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 311
XapI RAATTY 2 cut(s) 104, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.