Rh5DG346900

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011190
Physical Location & Seq
Reverse (-)
47394572 .. 47412155
17584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG346900.1

Sequence Viewer

Length: 324 bp
ATGATTCGCATCTGTCGCTTGTCGGCGTCTCGGGGATTTGTTGAGAAAGAAGGAGAATCAGATCTGGAGAGGACTGAAGGAGAATCGGATCTCGGTTTCTCCAATCGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGTGACCCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGCAAAGTGTGCAAGGGCGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.37

Weight (kDa)

8.79

Isoelectric Point (pI)

15.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 2 cut(s) 193, 279
AflII CTTAAG 1 cut(s) 146
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 287
BglII AGATCT 1 cut(s) 61
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 30
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 120, 190
Bse8I GATNNNNATC 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 2 cut(s) 120, 190
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 30
Bsp143I GATC 2 cut(s) 61, 88
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 120, 190
BssMI GATC 2 cut(s) 61, 88
BssNI GRCGYC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 152
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 2 cut(s) 64, 91
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 61, 88
BstMWI GCNNNNNNNGC 3 cut(s) 15, 122, 258
BstPI GGTNACC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 61, 88
BstYI RGATCY 2 cut(s) 61, 88
BsuRI GGCC 1 cut(s) 119
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 269
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 192, 278
CviJI RGCY 3 cut(s) 119, 229, 240
CviKI_1 RGCY 3 cut(s) 119, 229, 240
CviQI GTAC 2 cut(s) 192, 278
DpnI GATC 2 cut(s) 63, 90
DpnII GATC 2 cut(s) 61, 88
EaeI YGGCCR 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 119
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 3 cut(s) 4, 56, 83
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 61, 88
Hpy188III TCNNGA 3 cut(s) 65, 303, 312
Hpy99I CGWCG 1 cut(s) 318
HpyAV CCTTC 2 cut(s) 44, 71
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 252, 261, 285, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 122, 258
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 61, 88
LpnPI CCDG 7 cut(s) 50, 165, 171, 222, 255, 282, 288
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 152, 209
MalI GATC 2 cut(s) 63, 90
MboI GATC 2 cut(s) 61, 88
MboII GAAGA 1 cut(s) 196
MflI RGATCY 2 cut(s) 61, 88
MnlI CCTC 3 cut(s) 63, 143, 165
MseI TTAA 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 15, 122, 258
NdeII GATC 2 cut(s) 61, 88
NmuCI GTSAC 1 cut(s) 152
PfeI GAWTC 3 cut(s) 4, 56, 83
PkrI GCNGC 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 2 cut(s) 61, 88
RsaI GTAC 2 cut(s) 193, 279
RsaNI GTAC 2 cut(s) 192, 278
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 61, 88
SetI ASST 3 cut(s) 176, 231, 301
SfaNI GCATC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 313
TaqII GACCGA 1 cut(s) 131
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 3 cut(s) 4, 56, 83
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.