Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011190

Physical Location & Seq

Genomic Coordinates Reverse (-)

46801958 .. 46805620

Gene Structure 3663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCACACTTTCCTGCTCCTACTCTCTTCATCCTCTTTCTTCTTCTTCTTCTTCTTTTTCAACGTCTCTCACTCTCCCGCAACATCAACAACAGCAGACCGAATTCCCATTACTGCTGTTCCGCTGCTCTGCCTCTCTTAAACCCGAAGTCATTATAGAACCAACAAGCAGGCTCTTTGTCCAACCCGTTCTCCTTTTAACTACTGGCTTTAACACACCCTTGGACACCCAAACCTTTCTTGCCACTATCAGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGTGACCCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGCAAAGTGTGCAAGGGCGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.62

Weight (kDa)

8.87

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44020
fragaria_vesca	FvH4_3g26920
malus_domestica	MD03G1161000.v1.1 MD11G1177000.v1.1
prunus_persica	Prupe.6G149200_v2.0.a1 Prupe.6G149200_v2.0.a1
pyrus_communis	pycom03g11330 pycom11g15100
rosa_chinensis	RchiOBHm_Chr5g0049271
rosa_laevigata	RLG00000034609
rosa_multiflora	Rmu_sc0005358.1_g000011 Rmu_sc0009674.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032390
rosa_rugosa	Rorug05G0246900 Rorug05G0247000 Rorug05G0247100
rosa_samantha	Rh5BG334800 Rh5DG346900 Rh7BG059700
rosa_wichuraiana	Rw5G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AciI	CCGC	3 cut(s)	80, 124, 263
AcoI	YGGCCR	2 cut(s)	3, 264
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	340, 426
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	3, 264
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	127, 264
BlsI	GCNGC	2 cut(s)	128, 265
BpiI	GAAGAC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	2 cut(s)	267, 337
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	267, 337
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	5, 266
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	5, 266
BspACI	CCGC	3 cut(s)	80, 124, 263
BspANI	GGCC	2 cut(s)	5, 266
BspMI	ACCTGC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	267, 337
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	465
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstC8I	GCNNGC	2 cut(s)	173, 328
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 405
BstPI	GGTNACC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	5, 266
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	2 cut(s)	173, 328
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	339, 425
CviJI	RGCY	6 cut(s)	5, 175, 210, 266, 376, 387
CviKI_1	RGCY	6 cut(s)	5, 175, 210, 266, 376, 387
CviQI	GTAC	2 cut(s)	339, 425
EaeI	YGGCCR	2 cut(s)	3, 264
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	72
FaiI	YATR	1 cut(s)	158
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	127, 264
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	127, 264
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	2 cut(s)	127, 264
HaeIII	GGCC	2 cut(s)	5, 266
HhaI	GCGC	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HphI	GGTGA	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	450, 459
Hpy99I	CGWCG	1 cut(s)	465
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	399, 408, 432, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 405
HpySE526I	ACGT	1 cut(s)	65
HspAI	GCGC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	9 cut(s)	28, 157, 192, 312, 318, 369, 402, 429, 435
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	299, 356
MboII	GAAGA	7 cut(s)	20, 33, 36, 39, 42, 45, 343
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	45, 145, 290, 312
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	141, 200, 213, 294
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	269, 405
NmuCI	GTSAC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	128, 265
PspEI	GGTNACC	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	340, 426
RsaNI	GTAC	2 cut(s)	339, 425
SaqAI	TTAA	4 cut(s)	141, 200, 213, 294
SatI	GCNGC	2 cut(s)	127, 264
SetI	ASST	5 cut(s)	68, 239, 323, 378, 448
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	3 cut(s)	80, 124, 263
SspMI	CTAG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	460
TaqII	GACCGA	2 cut(s)	116, 278
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	141, 200, 213, 294
Tru9I	TTAA	4 cut(s)	141, 200, 213, 294
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	20, 386
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.