Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005358.1

Orthogroup ID

OG0011190

Physical Location & Seq

Genomic Coordinates Reverse (-)

43713 .. 48947

Gene Structure 5235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005358.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgtcgcgaggccgcgaggacgctgcggggatgtcgcgaggagttgcgggggagcgaggatgctgcgaagatgtcgcgaggtcacgagaagtcgcgaggatgctgtggagatgtcgcgaggtcgaggatgttgcggagatgtcgcgaggtcgcaaggagtcgcgagggcgtgaggatgctgtggagatgtcgcgaggttgctgcggggtaaagtgtgtcttggcggccattgctctctccctctttctcggtcttaagggtgaccctgtgccttgcgagaggtgtgctggcaatggtggtacaaaatgtgtcttctgtaacaatggtaaaatgaagctagaaacaggcttggttgattgcaaagtgtgcaagggcgcaggattggtactttgcaagaaatgtgcaggttctggatattctcgacgccggcgcctaggggcaggtgattctttttggatcgggtctggtgcttttcgggttcggtgttggcctccaggtggtggcgttgtggtgtggccggtggtccttgaagtgggcggcgacggtatggagcggtcgtggcagtggctcaccggcggcgtgcatcgtcctcaacacaggaaggtggagacgtggcaaggctgggtcaacgatttgggcctagggtttctgttttttctttgggccattagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.4

Weight (kDa)

9.12

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44020
fragaria_vesca	FvH4_3g26920
malus_domestica	MD03G1161000.v1.1 MD11G1177000.v1.1
prunus_persica	Prupe.6G149200_v2.0.a1 Prupe.6G149200_v2.0.a1
pyrus_communis	pycom03g11330 pycom11g15100
rosa_chinensis	RchiOBHm_Chr5g0049271
rosa_laevigata	RLG00000034609
rosa_multiflora	Rmu_sc0005358.1_g000011 Rmu_sc0009674.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032390
rosa_rugosa	Rorug05G0246900 Rorug05G0247000 Rorug05G0247100
rosa_samantha	Rh5BG334800 Rh5DG346900 Rh7BG059700
rosa_wichuraiana	Rw5G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	2 cut(s)	395, 431
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	553
AccII	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
AciI	CCGC	9 cut(s)	13, 26, 47, 134, 204, 224, 537, 553, 576
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	2 cut(s)	225, 515
AcyI	GRCGYC	2 cut(s)	424, 430
AfaI	GTAC	2 cut(s)	301, 387
AfiI	CCNNNNNNNGG	3 cut(s)	497, 500, 532
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	530
AjiI	CACGTC	1 cut(s)	612
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	6 cut(s)	10, 225, 488, 515, 637, 663
ApeKI	GCWGC	3 cut(s)	23, 63, 201
AspA2I	CCTAGG	2 cut(s)	433, 640
AspLEI	GCGC	2 cut(s)	377, 432
AspS9I	GGNCC	3 cut(s)	523, 637, 663
AsuHPI	GGTGA	3 cut(s)	272, 455, 562
AvaII	GGWCC	1 cut(s)	523
AvrII	CCTAGG	2 cut(s)	433, 640
BanI	GGYRCC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	10, 50, 188
BciT130I	CCWGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	3 cut(s)	338, 434, 641
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	2 cut(s)	395, 431
BisI	GCNGC	7 cut(s)	13, 24, 64, 202, 225, 538, 577
BlnI	CCTAGG	2 cut(s)	433, 640
BlsI	GCNGC	7 cut(s)	14, 25, 65, 203, 226, 539, 578
Bme1390I	CCNGG	1 cut(s)	495
Bme18I	GGWCC	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	523, 637, 663
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	495
BmsI	GCATC	4 cut(s)	50, 90, 166, 592
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	477
BsaHI	GRCGYC	2 cut(s)	424, 430
BsaJI	CCNNGG	2 cut(s)	433, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 500, 532
Bse118I	RCCGGY	3 cut(s)	426, 517, 572
Bse3DI	GCAATG	2 cut(s)	228, 298
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	433, 640
BseGI	GGATG	5 cut(s)	36, 65, 105, 133, 181
BseLI	CCNNNNNNNGG	3 cut(s)	497, 500, 532
BseMI	GCAATG	2 cut(s)	228, 298
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	10, 50, 188
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	6 cut(s)	12, 227, 490, 517, 639, 665
BshNI	GGYRCC	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	557
BsiSI	CCGG	3 cut(s)	427, 518, 573
BslI	CCNNNNNNNGG	3 cut(s)	497, 500, 532
BsmAI	GTCTC	1 cut(s)	602
BsmBI	CGTCTC	1 cut(s)	602
BsnI	GGCC	6 cut(s)	12, 227, 490, 517, 639, 665
Bsp143I	GATC	1 cut(s)	456
Bsp68I	TCGCGA	8 cut(s)	7, 37, 77, 95, 117, 145, 163, 193
BspACI	CCGC	9 cut(s)	13, 26, 47, 134, 204, 224, 537, 553, 576
BspANI	GGCC	6 cut(s)	12, 227, 490, 517, 639, 665
BspFNI	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	2 cut(s)	395, 431
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	429
BspTI	CTTAAG	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	553
BsrDI	GCAATG	2 cut(s)	228, 298
BsrFI	RCCGGY	3 cut(s)	426, 517, 572
BssAI	RCCGGY	3 cut(s)	426, 517, 572
BssECI	CCNNGG	2 cut(s)	433, 640
BssMI	GATC	1 cut(s)	456
BssNI	GRCGYC	2 cut(s)	424, 430
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	433, 640
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	545
BstACI	GRCGYC	2 cut(s)	424, 430
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	289, 428, 581
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	5 cut(s)	36, 65, 105, 133, 181
BstFNI	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	2 cut(s)	377, 432
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	1 cut(s)	456
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 366, 559
BstNI	CCWGG	1 cut(s)	495
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	493
BstUI	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
BstV1I	GCAGC	3 cut(s)	10, 50, 188
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	6 cut(s)	12, 227, 490, 517, 639, 665
BtrI	CACGTC	1 cut(s)	612
BtsCI	GGATG	5 cut(s)	36, 65, 105, 133, 181
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	1 cut(s)	569
BtuMI	TCGCGA	8 cut(s)	7, 37, 77, 95, 117, 145, 163, 193
BveI	ACCTGC	2 cut(s)	395, 431
Cac8I	GCNNGC	3 cut(s)	289, 428, 581
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	377, 432
Cfr10I	RCCGGY	3 cut(s)	426, 517, 572
Cfr13I	GGNCC	3 cut(s)	523, 637, 663
CseI	GACGC	2 cut(s)	29, 432
Csp6I	GTAC	2 cut(s)	300, 386
CviQI	GTAC	2 cut(s)	300, 386
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
EaeI	YGGCCR	2 cut(s)	225, 515
Eco130I	CCWWGG	2 cut(s)	433, 640
Eco47I	GGWCC	1 cut(s)	523
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	433, 640
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	433, 640
Esp3I	CGTCTC	1 cut(s)	602
FaiI	YATR	1 cut(s)	548
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FauI	CCCGC	3 cut(s)	19, 40, 197
Fnu4HI	GCNGC	7 cut(s)	13, 24, 64, 202, 225, 538, 577
FokI	GGATG	5 cut(s)	43, 72, 112, 140, 188
Fsp4HI	GCNGC	7 cut(s)	13, 24, 64, 202, 225, 538, 577
FspBI	CTAG	3 cut(s)	338, 434, 641
GlaI	GCGC	2 cut(s)	376, 431
GluI	GCNGC	7 cut(s)	13, 24, 64, 202, 225, 538, 577
GsaI	CCCAGC	1 cut(s)	625
GsuI	CTGGAG	1 cut(s)	477
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	6 cut(s)	12, 227, 490, 517, 639, 665
HapII	CCGG	3 cut(s)	427, 518, 573
HgaI	GACGC	2 cut(s)	29, 432
HhaI	GCGC	2 cut(s)	377, 432
Hin1I	GRCGYC	2 cut(s)	424, 430
Hin6I	GCGC	2 cut(s)	375, 430
HinP1I	GCGC	2 cut(s)	375, 430
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	2 cut(s)	158, 446
HpaII	CCGG	3 cut(s)	427, 518, 573
HphI	GGTGA	3 cut(s)	272, 455, 562
Hpy166II	GTNNAC	1 cut(s)	628
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	2 cut(s)	426, 545
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	5 cut(s)	360, 369, 393, 404, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 366, 559
HpySE526I	ACGT	1 cut(s)	611
Hsp92I	GRCGYC	2 cut(s)	424, 430
HspAI	GCGC	2 cut(s)	375, 430
KasI	GGCGCC	1 cut(s)	429
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	52, 550
Lsp1109I	GCAGC	3 cut(s)	10, 50, 188
LweI	GCATC	4 cut(s)	50, 90, 166, 592
MaeI	CTAG	3 cut(s)	338, 434, 641
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	81, 260, 317
MalI	GATC	1 cut(s)	458
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	1 cut(s)	456
MboII	GAAGA	2 cut(s)	80, 304
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	167
MreI	CGCCGGCG	1 cut(s)	426
MroNI	GCCGGC	1 cut(s)	426
MseI	TTAA	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	427, 518, 573
MspR9I	CCNGG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	9 cut(s)	7, 15, 37, 77, 95, 117, 145, 163, 193
MwoI	GCNNNNNNNGC	3 cut(s)	230, 366, 559
NaeI	GCCGGC	1 cut(s)	428
NarI	GGCGCC	1 cut(s)	430
NdeII	GATC	1 cut(s)	456
NgoMIV	GCCGGC	1 cut(s)	426
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	81, 260
NruI	TCGCGA	8 cut(s)	7, 37, 77, 95, 117, 145, 163, 193
PaqCI	CACCTGC	1 cut(s)	431
PdiI	GCCGGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	7 cut(s)	14, 25, 65, 203, 226, 539, 578
PleI	GAGTC	1 cut(s)	166
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	493
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	523, 637, 663
PstNI	CAGNNNCTG	1 cut(s)	410
RruI	TCGCGA	8 cut(s)	7, 37, 77, 95, 117, 145, 163, 193
RsaI	GTAC	2 cut(s)	301, 387
RsaNI	GTAC	2 cut(s)	300, 386
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	7 cut(s)	13, 24, 64, 202, 225, 538, 577
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	3 cut(s)	523, 637, 663
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	495
SfaNI	GCATC	4 cut(s)	50, 90, 166, 592
SfoI	GGCGCC	1 cut(s)	431
SgrAI	CRCCGGYG	2 cut(s)	426, 572
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	9 cut(s)	13, 26, 47, 134, 204, 224, 537, 553, 576
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	3 cut(s)	338, 434, 641
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	2 cut(s)	433, 640
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	614
TaqI	TCGA	2 cut(s)	123, 421
TaqII	GACCGA	1 cut(s)	239
TauI	GCSGC	4 cut(s)	15, 227, 540, 579
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	569
TseFI	GTSAC	2 cut(s)	81, 260
TseI	GCWGC	3 cut(s)	23, 63, 201
Tsp45I	GTSAC	2 cut(s)	81, 260
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	500
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	523
XmaJI	CCTAGG	2 cut(s)	433, 640
XspI	CTAG	3 cut(s)	338, 434, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.