Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009674.1

Orthogroup ID

OG0011190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2735 .. 6160

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009674.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggccacactttcctgctcctactctcttcatcctctttcttcttctttttcaacgtctctcactctcccgcaacatcaacaacagcagaccgaattcccaacaagacctgaattcccattactgctgttccgctgctccgcctctcttaaacccgaagtcattatagaaccaacaagcaggctctttctccaacccattctccttttaactactggctttaacacacccttggacacccaaacctttcttgccactatcagtgtcttggcggccattgctctctccctctttctcggtcttaagggtgaccctgtgccttgcgagaggtgtgctggcaatggtggtacaaaatgtgtcttctgtaacaatggtaaaatgaagctagaaacaggcttggttgattgcaaagtgtgcaagggcgcaggattgacggtggcagcgcgacttcatcgtcgagatgcagccggcgctctaggggcaggtgattctttttggatcgggtctggtgcttttcgggttcggtgttggcctccaggtggtggcgttgtggtgtggccagtggtccttgaagtgggcggcgatggtatggagcgatcgtggcagtggctcgccggcggcgtgcatcgtcctcaacacaggaagcatggcaaggctgggtcaacgatttgggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.13

Weight (kDa)

9.08

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44020
fragaria_vesca	FvH4_3g26920
malus_domestica	MD03G1161000.v1.1 MD11G1177000.v1.1
prunus_persica	Prupe.6G149200_v2.0.a1 Prupe.6G149200_v2.0.a1
pyrus_communis	pycom03g11330 pycom11g15100
rosa_chinensis	RchiOBHm_Chr5g0049271
rosa_laevigata	RLG00000034609
rosa_multiflora	Rmu_sc0005358.1_g000011 Rmu_sc0009674.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032390
rosa_rugosa	Rorug05G0246900 Rorug05G0247000 Rorug05G0247100
rosa_samantha	Rh5BG334800 Rh5DG346900 Rh7BG059700
rosa_wichuraiana	Rw5G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	473
AasI	GACNNNNNNGTC	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	1 cut(s)	445
AciI	CCGC	6 cut(s)	71, 133, 141, 272, 579, 618
AclWI	GGATC	1 cut(s)	506
AcoI	YGGCCR	3 cut(s)	3, 273, 557
AcsI	RAATTY	2 cut(s)	95, 113
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	539, 542, 574
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	54, 572
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	5 cut(s)	3, 273, 530, 557, 672
ApeKI	GCWGC	3 cut(s)	135, 440, 464
ApoI	RAATTY	2 cut(s)	95, 113
AspLEI	GCGC	3 cut(s)	425, 445, 473
AspS9I	GGNCC	2 cut(s)	565, 672
AsuHPI	GGTGA	2 cut(s)	320, 497
AvaII	GGWCC	1 cut(s)	565
BalI	TGGCCA	2 cut(s)	5, 559
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	122, 452, 476
BccI	CCATC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	386, 476, 676
BfoI	RGCGCY	1 cut(s)	474
BfrI	CTTAAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	6 cut(s)	136, 273, 441, 465, 580, 619
BlsI	GCNGC	6 cut(s)	137, 274, 442, 466, 581, 620
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	565, 672
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	451, 634
BpiI	GAAGAC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	539, 542, 574
Bse118I	RCCGGY	2 cut(s)	467, 614
Bse1I	ACTGG	2 cut(s)	220, 560
Bse3DI	GCAATG	2 cut(s)	276, 346
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	539, 542, 574
BseMI	GCAATG	2 cut(s)	276, 346
BseNI	ACTGG	2 cut(s)	220, 560
BseXI	GCAGC	3 cut(s)	122, 452, 476
BseYI	CCCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	5 cut(s)	5, 275, 532, 559, 674
BsiEI	CGRYCG	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	468, 615
BslI	CCNNNNNNNGG	3 cut(s)	539, 542, 574
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	5 cut(s)	5, 275, 532, 559, 674
Bsp143I	GATC	2 cut(s)	498, 596
BspACI	CCGC	6 cut(s)	71, 133, 141, 272, 579, 618
BspANI	GGCC	5 cut(s)	5, 275, 532, 559, 674
BspFNI	CGCG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	506
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	276, 346
BsrFI	RCCGGY	2 cut(s)	467, 614
BsrI	ACTGG	2 cut(s)	220, 560
BssAI	RCCGGY	2 cut(s)	467, 614
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	2 cut(s)	498, 596
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstC8I	GCNNGC	6 cut(s)	182, 337, 469, 612, 616, 623
BstEII	GGTNACC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	3 cut(s)	425, 445, 473
BstKTI	GATC	2 cut(s)	501, 599
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	2 cut(s)	498, 596
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 414, 470, 479, 601
BstNI	CCWGG	1 cut(s)	537
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	3 cut(s)	122, 452, 476
BstV2I	GAAGAC	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	5, 275, 532, 559, 674
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	611
BtsIMutI	CAGTG	3 cut(s)	268, 567, 611
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	6 cut(s)	182, 337, 469, 612, 616, 623
CfoI	GCGC	3 cut(s)	425, 445, 473
Cfr10I	RCCGGY	2 cut(s)	467, 614
Cfr13I	GGNCC	2 cut(s)	565, 672
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	2 cut(s)	500, 598
DpnII	GATC	2 cut(s)	498, 596
DrdI	GACNNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	453
EaeI	YGGCCR	3 cut(s)	3, 273, 557
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	565
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRI	GAATTC	2 cut(s)	95, 113
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	650
FaiI	YATR	3 cut(s)	167, 590, 648
FatI	CATG	1 cut(s)	646
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	6 cut(s)	136, 273, 441, 465, 580, 619
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	6 cut(s)	136, 273, 441, 465, 580, 619
FspBI	CTAG	3 cut(s)	386, 476, 676
GlaI	GCGC	3 cut(s)	424, 444, 472
GluI	GCNGC	6 cut(s)	136, 273, 441, 465, 580, 619
GsaI	CCCAGC	1 cut(s)	660
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	5 cut(s)	5, 275, 532, 559, 674
HapII	CCGG	2 cut(s)	468, 615
HhaI	GCGC	3 cut(s)	425, 445, 473
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	3 cut(s)	423, 443, 471
HinP1I	GCGC	3 cut(s)	423, 443, 471
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	1 cut(s)	488
HpaII	CCGG	2 cut(s)	468, 615
HphI	GGTGA	2 cut(s)	320, 497
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	1 cut(s)	663
Hpy99I	CGWCG	1 cut(s)	459
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	408, 417, 464, 625
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 414, 470, 479, 601
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	3 cut(s)	423, 443, 471
KroI	GCCGGC	2 cut(s)	467, 614
KroNI	GCCGGC	2 cut(s)	469, 616
Kzo9I	GATC	2 cut(s)	498, 596
LmnI	GCTCC	3 cut(s)	23, 143, 592
Lsp1109I	GCAGC	3 cut(s)	122, 452, 476
LweI	GCATC	2 cut(s)	451, 634
MaeI	CTAG	3 cut(s)	386, 476, 676
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	308, 365
MalI	GATC	2 cut(s)	500, 598
MboI	GATC	2 cut(s)	498, 596
MboII	GAAGA	4 cut(s)	20, 33, 36, 352
MlsI	TGGCCA	2 cut(s)	5, 559
MluCI	AATT	2 cut(s)	95, 113
MluNI	TGGCCA	2 cut(s)	5, 559
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	45, 154, 299, 321, 543, 642
Mox20I	TGGCCA	2 cut(s)	5, 559
MreI	CGCCGGCG	1 cut(s)	614
MroNI	GCCGGC	2 cut(s)	467, 614
MscI	TGGCCA	2 cut(s)	5, 559
MseI	TTAA	4 cut(s)	150, 209, 222, 303
Msp20I	TGGCCA	2 cut(s)	5, 559
MspA1I	CMGCKG	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	2 cut(s)	468, 615
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	445
MwoI	GCNNNNNNNGC	5 cut(s)	278, 414, 470, 479, 601
NaeI	GCCGGC	2 cut(s)	469, 616
NdeII	GATC	2 cut(s)	498, 596
NgoMIV	GCCGGC	2 cut(s)	467, 614
NlaIII	CATG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdiI	GCCGGC	2 cut(s)	469, 616
PfeI	GAWTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	6 cut(s)	137, 274, 442, 466, 581, 620
Ple19I	CGATCG	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	535
PspPI	GGNCC	2 cut(s)	565, 672
PvuI	CGATCG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	150, 209, 222, 303
SatI	GCNGC	6 cut(s)	136, 273, 441, 465, 580, 619
Sau3AI	GATC	2 cut(s)	498, 596
Sau96I	GGNCC	2 cut(s)	565, 672
ScrFI	CCNGG	1 cut(s)	537
SetI	ASST	7 cut(s)	59, 112, 248, 332, 387, 487, 541
SfaNI	GCATC	2 cut(s)	451, 634
SgrAI	CRCCGGYG	1 cut(s)	614
SinI	GGWCC	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	95, 113
SsiI	CCGC	6 cut(s)	71, 133, 141, 272, 579, 618
SspMI	CTAG	3 cut(s)	386, 476, 676
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	457
TaqII	GACCGA	2 cut(s)	107, 287
TasI	AATT	2 cut(s)	95, 113
TauI	GCSGC	3 cut(s)	275, 582, 621
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	4 cut(s)	150, 209, 222, 303
Tru9I	TTAA	4 cut(s)	150, 209, 222, 303
TscAI	CASTG	3 cut(s)	268, 567, 611
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	135, 440, 464
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	20, 395, 440
TspRI	CASTG	3 cut(s)	268, 567, 611
Van91I	CCANNNNNTGG	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	2 cut(s)	95, 113
XspI	CTAG	3 cut(s)	386, 476, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.