MD03G1161000.v1.1

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011190
Physical Location & Seq
Reverse (-)
19383330 .. 19385737
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1161000.v1.1.491

Sequence Viewer

Length: 486 bp
ATGGCCACACTTTCCTGCTATTCCCTCCACCCTCTTTTTTCTTCTTCTTCTCCGTCAGCAACTTCTCATTCTTTTCCACACCAACCTCAAACAAAACCCGAAACCCCTCCTCCACTCATCCGTTGCTCCGCCACCGGCATTGCCACCATTGCCGCCGCCGGACCTGAAATCATAATTCAGCCAACTGCGAGGCTGTTGGTCCAACCCATTTTCCTGTTTGCTGGCTTCGACAGACCCTTGGACACCCAAACTTTTCTTGCCACAATCAGTGTCTTGGCCGCCATTGCTTTCTCCCTCTTTCTCGGTCTGAAGGGTGACCCTGTGCCTTGTGAGAGATGTGCTGGCAACGGTGGTACAAAATGTGTCTTCTGCAACAATGGAAAAATGAAGGTAGAGACGGGCTTGGTTGACTGCAAGGTGTGCAAGGGTGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATACTCTCGACGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

16.89

Weight (kDa)

9.0

Isoelectric Point (pI)

31.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 449
AciI CCGC 4 cut(s) 129, 153, 156, 279
AcoI YGGCCR 2 cut(s) 3, 276
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 355, 441
Alw26I GTCTC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 2 cut(s) 3, 276
AspS9I GGNCC 2 cut(s) 161, 199
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 2 cut(s) 161, 199
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 358
BciVI GTATCC 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 449
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 3 cut(s) 153, 156, 279
BlsI GCNGC 3 cut(s) 154, 157, 280
Bme18I GGWCC 2 cut(s) 161, 199
BmgT120I GGNCC 2 cut(s) 161, 199
BpiI GAAGAC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 3 cut(s) 138, 147, 282
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 3 cut(s) 138, 147, 282
BseRI GAGGAG 1 cut(s) 99
BsgI GTGCAG 2 cut(s) 450, 477
BshFI GGCC 2 cut(s) 5, 278
BsiSI CCGG 2 cut(s) 135, 159
BsmAI GTCTC 1 cut(s) 389
BsmBI CGTCTC 1 cut(s) 389
BsnI GGCC 2 cut(s) 5, 278
BspACI CCGC 4 cut(s) 129, 153, 156, 279
BspANI GGCC 2 cut(s) 5, 278
BspMI ACCTGC 1 cut(s) 449
BsrDI GCAATG 3 cut(s) 138, 147, 282
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 223, 343
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 389
BstMWI GCNNNNNNNGC 3 cut(s) 149, 284, 420
BstPI GGTNACC 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 358
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 2 cut(s) 5, 278
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 223, 343
CaiI CAGNNNCTG 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 161, 199
Csp6I GTAC 2 cut(s) 354, 440
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviJI RGCY 7 cut(s) 5, 181, 193, 225, 278, 402, 481
CviKI_1 RGCY 7 cut(s) 5, 181, 193, 225, 278, 402, 481
CviQI GTAC 2 cut(s) 354, 440
EaeI YGGCCR 2 cut(s) 3, 276
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 2 cut(s) 161, 199
Eco57I CTGAAG 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 389
FaiI YATR 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 153, 156, 279
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 3 cut(s) 153, 156, 279
GluI GCNGC 3 cut(s) 153, 156, 279
HaeIII GGCC 2 cut(s) 5, 278
HapII CCGG 2 cut(s) 135, 159
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HpaII CCGG 2 cut(s) 135, 159
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 2 cut(s) 465, 474
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 304, 382
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 6 cut(s) 372, 414, 423, 431, 447, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 284, 420
LmnI GCTCC 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 4 cut(s) 33, 36, 39, 358
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 174
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 7 cut(s) 35, 42, 96, 117, 120, 183, 305
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 135, 159
MwoI GCNNNNNNNGC 3 cut(s) 149, 284, 420
NmuCI GTSAC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 154, 157, 280
PspEI GGTNACC 1 cut(s) 314
PspPI GGNCC 2 cut(s) 161, 199
PstNI CAGNNNCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 355, 441
RsaNI GTAC 2 cut(s) 354, 440
SatI GCNGC 3 cut(s) 153, 156, 279
Sau96I GGNCC 2 cut(s) 161, 199
SetI ASST 5 cut(s) 88, 166, 393, 420, 463
SinI GGWCC 2 cut(s) 161, 199
Sse9I AATT 1 cut(s) 174
SsiI CCGC 4 cut(s) 129, 153, 156, 279
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 228, 475
TaqII GACCGA 1 cut(s) 293
TasI AATT 1 cut(s) 174
TauI GCSGC 3 cut(s) 155, 158, 281
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 2 cut(s) 42, 110
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 161, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.