FvH4_3g26920

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011190
Physical Location & Seq
Reverse (-)
20017857 .. 20021045
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26920.t1

Sequence Viewer

Length: 498 bp
ATGGCCACACTTTCCTGCTCCTCCTACTTCCTTCATCCTCTTTCTTCTTCTTCTTCTTCTTCAACGTCTCTTACTCTCCCCCAACAACAACAACAACAACAGCAACACCCACCATTACCAACACGACCTGAAATCCCATCAGTGCTGTTCCGCTGCTCTGCCTCTATTAAGCCCCTCCAAGTCATTATAGAACCCACAAGGCTCTTTGTCCAACCCATTCTCCTATTAACTACTGGCTTTAACAACCCCTTGGATACCCAAACGTTTCTCGCCACTATAAGTGTCTTGGCCGCCATTGCTCTCTCTCTGTTTCTCGGTCTTAAGGGGGAACCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACCAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGTAAAGTTTGCAAGGGTGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.66

Weight (kDa)

9.12

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 2 cut(s) 151, 291
AclI AACGTT 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 3, 288
AfaI GTAC 2 cut(s) 367, 453
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 476
AoxI GGCC 2 cut(s) 3, 288
ApeKI GCWGC 1 cut(s) 153
Asp718I GGTACC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 2 cut(s) 154, 291
BlsI GCNGC 2 cut(s) 155, 292
BmiI GGNNCC 2 cut(s) 330, 367
BpiI GAAGAC 1 cut(s) 370
BsaJI CCNNGG 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 2 cut(s) 294, 364
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 2 cut(s) 294, 364
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 2 cut(s) 462, 489
BshFI GGCC 2 cut(s) 5, 290
BshNI GGYRCC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 5, 290
BspACI CCGC 2 cut(s) 151, 291
BspANI GGCC 2 cut(s) 5, 290
BspLI GGNNCC 2 cut(s) 330, 367
BspMI ACCTGC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 294, 364
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 492
BstAFI CTTAAG 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 355
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 370
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 2 cut(s) 5, 290
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 476
Csp6I GTAC 2 cut(s) 366, 452
CviJI RGCY 7 cut(s) 5, 172, 202, 237, 290, 403, 414
CviKI_1 RGCY 7 cut(s) 5, 172, 202, 237, 290, 403, 414
CviQI GTAC 2 cut(s) 366, 452
EaeI YGGCCR 2 cut(s) 3, 288
Eco130I CCWWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 1 cut(s) 72
FaiI YATR 2 cut(s) 188, 278
Fnu4HI GCNGC 2 cut(s) 154, 291
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 154, 291
FspBI CTAG 1 cut(s) 404
GluI GCNGC 2 cut(s) 154, 291
HaeIII GGCC 2 cut(s) 5, 290
Hpy188III TCNNGA 2 cut(s) 477, 486
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 492
HpyCH4IV ACGT 2 cut(s) 65, 263
HpyCH4V TGCA 4 cut(s) 435, 443, 459, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 2 cut(s) 65, 263
KpnI GGTACC 1 cut(s) 369
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 9 cut(s) 28, 141, 219, 339, 345, 396, 429, 456, 462
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 404
MaeII ACGT 2 cut(s) 65, 263
MaeIII GTNAC 1 cut(s) 383
MboII GAAGA 7 cut(s) 36, 39, 42, 45, 48, 51, 370
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 5 cut(s) 31, 48, 172, 185, 339
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 168, 227, 240, 321
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 296
NlaIV GGNNCC 2 cut(s) 330, 367
PkrI GCNGC 2 cut(s) 155, 292
Psp1406I AACGTT 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 330, 367
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 367, 453
RsaNI GTAC 2 cut(s) 366, 452
SaqAI TTAA 4 cut(s) 168, 227, 240, 321
SatI GCNGC 2 cut(s) 154, 291
SetI ASST 7 cut(s) 68, 130, 266, 334, 350, 405, 475
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SsiI CCGC 2 cut(s) 151, 291
SspMI CTAG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 492
TaiI ACGT 2 cut(s) 68, 266
TaqI TCGA 1 cut(s) 487
TaqII GACCGA 1 cut(s) 305
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 4 cut(s) 168, 227, 240, 321
Tru9I TTAA 4 cut(s) 168, 227, 240, 321
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 2 cut(s) 23, 413
TspRI CASTG 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 320
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.