Rroxscaffold_1G00032390

thylakoid lumenal P17.1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011190
Physical Location & Seq
Forward (+)
46347229 .. 46350101
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032390.1

Sequence Viewer

Length: 486 bp
ATGGCCACACTTTCCTGCTCCTACTCTCTTCATCCTCTTTCTTCTTCTTCTTCTTCTTTTTCAACGTCTCTCACTCTCCCGCAACATCAACAACAGCAGACCGAATTCCCAACAAGACCTGAATTCCCATTACTGCTGTTCCGCTGCTCTGCCTCTCTTAAACCCGAAGTCATTATAGAACCAACGAGCCTCTTTGTCCAACCCATTCTCCTTTTAACTACTGGCTTTAACACACCCTTGGACACCCAAACCTTTCTTGCCACTATCAGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGCGAACCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGCAAAGTGTGCAAGGGCGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.22

Weight (kDa)

8.72

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 449
AciI CCGC 3 cut(s) 80, 142, 278
AcoI YGGCCR 2 cut(s) 3, 279
AcsI RAATTY 2 cut(s) 104, 122
AfaI GTAC 2 cut(s) 355, 441
AflII CTTAAG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 63
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 2 cut(s) 3, 279
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 104, 122
AspLEI GCGC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 392
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 2 cut(s) 145, 279
BlsI GCNGC 2 cut(s) 146, 280
BpiI GAAGAC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 282, 352
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 31
BseMI GCAATG 2 cut(s) 282, 352
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 2 cut(s) 5, 281
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 5, 281
BspACI CCGC 3 cut(s) 80, 142, 278
BspANI GGCC 2 cut(s) 5, 281
BspMI ACCTGC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 282, 352
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 431
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 284, 420
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 358
BsuRI GGCC 2 cut(s) 5, 281
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 354, 440
CviJI RGCY 6 cut(s) 5, 189, 225, 281, 391, 402
CviKI_1 RGCY 6 cut(s) 5, 189, 225, 281, 391, 402
CviQI GTAC 2 cut(s) 354, 440
EaeI YGGCCR 2 cut(s) 3, 279
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 104, 122
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 72
FaiI YATR 1 cut(s) 176
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 145, 279
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 145, 279
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 430
GluI GCNGC 2 cut(s) 145, 279
HaeIII GGCC 2 cut(s) 5, 281
HhaI GCGC 1 cut(s) 431
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
Hpy188III TCNNGA 2 cut(s) 465, 474
Hpy99I CGWCG 1 cut(s) 480
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 414, 423, 447, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 420
HpySE526I ACGT 1 cut(s) 65
HspAI GCGC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 9 cut(s) 28, 132, 207, 327, 333, 384, 417, 444, 450
Lsp1109I GCAGC 1 cut(s) 131
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 371
MboII GAAGA 7 cut(s) 20, 33, 36, 39, 42, 45, 358
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 104, 122
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 5 cut(s) 45, 163, 200, 305, 327
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 159, 215, 228, 309
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 284, 420
PkrI GCNGC 2 cut(s) 146, 280
PstNI CAGNNNCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 355, 441
RsaNI GTAC 2 cut(s) 354, 440
SaqAI TTAA 4 cut(s) 159, 215, 228, 309
SatI GCNGC 2 cut(s) 145, 279
SetI ASST 7 cut(s) 68, 121, 254, 322, 338, 393, 463
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 104, 122
SsiI CCGC 3 cut(s) 80, 142, 278
SspMI CTAG 1 cut(s) 392
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 475
TaqII GACCGA 2 cut(s) 116, 293
TasI AATT 2 cut(s) 104, 122
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 4 cut(s) 159, 215, 228, 309
Tru9I TTAA 4 cut(s) 159, 215, 228, 309
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 20, 401
TspRI CASTG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 308
XapI RAATTY 2 cut(s) 104, 122
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.