Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

16917527 .. 16920018

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCTCCACCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGCATTGACTTTAAGATAAGAACGATTGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGATACCGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAATATCGAACAGCATGCTTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAGGGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGAGTACGGAATTAAGTTCTTCGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACGATCAAGATAAGCCAAACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

7.65

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 144	4.7e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	8.9e-68	Ras family
Roc	PF08477	17 - 131	5.8e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 170	7.7e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	3 cut(s)	72, 213, 226
AclWI	GGATC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	417, 452
AfiI	CCNNNNNNNGG	2 cut(s)	496, 558
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	6 cut(s)	29, 52, 129, 175, 196, 605
AluI	AGCT	6 cut(s)	29, 52, 129, 175, 196, 605
AlwI	GGATC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	5, 602
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	112, 232
AsuII	TTCGAA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	1 cut(s)	104
BcgI	CGANNNNNNTGC	4 cut(s)	329, 363, 458, 492
BciVI	GTATCC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	18, 126
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	2 cut(s)	6, 603
BlsI	GCNGC	2 cut(s)	7, 604
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 558
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	302, 403
BseLI	CCNNNNNNNGG	2 cut(s)	496, 558
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	614
BshFI	GGCC	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	2 cut(s)	496, 558
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	556
Bsp119I	TTCGAA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	113, 369, 576
BspACI	CCGC	3 cut(s)	72, 213, 226
BspANI	GGCC	1 cut(s)	620
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	113, 369, 576
Bst4CI	ACNGT	2 cut(s)	182, 257
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	468
BstC8I	GCNNGC	4 cut(s)	348, 570, 618, 637
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	302, 403
BstKTI	GATC	3 cut(s)	116, 372, 579
BstMBI	GATC	3 cut(s)	113, 369, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
BstNSI	RCATGY	2 cut(s)	350, 639
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	113, 369
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	113, 369
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	302, 403
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	348, 570, 618, 637
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	416, 451
CviAII	CATG	3 cut(s)	347, 394, 636
CviQI	GTAC	2 cut(s)	416, 451
DpnI	GATC	3 cut(s)	115, 371, 578
DpnII	GATC	3 cut(s)	113, 369, 576
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	556
FaeI	CATG	3 cut(s)	350, 397, 639
FaiI	YATR	4 cut(s)	285, 348, 395, 637
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	3 cut(s)	346, 393, 635
Fnu4HI	GCNGC	2 cut(s)	6, 603
FokI	GGATG	2 cut(s)	289, 410
Fsp4HI	GCNGC	2 cut(s)	6, 603
FspBI	CTAG	2 cut(s)	18, 126
GluI	GCNGC	2 cut(s)	6, 603
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	620
Hin1II	CATG	3 cut(s)	350, 397, 639
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	50, 194
HinfI	GANTC	3 cut(s)	299, 328, 554
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	2 cut(s)	112, 232
Hpy166II	GTNNAC	2 cut(s)	185, 364
Hpy188I	TCNGA	5 cut(s)	109, 201, 234, 355, 547
Hpy188III	TCNNGA	2 cut(s)	221, 580
Hpy8I	GTNNAC	2 cut(s)	185, 364
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	182, 257
HpyCH4IV	ACGT	3 cut(s)	100, 187, 495
HpyCH4V	TGCA	2 cut(s)	572, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
HpySE526I	ACGT	3 cut(s)	100, 187, 495
Hsp92II	CATG	3 cut(s)	350, 397, 639
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	113, 369, 576
LmnI	GCTCC	2 cut(s)	13, 608
Lsp1109I	GCAGC	1 cut(s)	614
MaeI	CTAG	2 cut(s)	18, 126
MaeII	ACGT	3 cut(s)	100, 187, 495
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	115, 371, 578
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	3 cut(s)	113, 369, 576
MboII	GAAGA	5 cut(s)	83, 86, 457, 502, 512
MflI	RGATCY	2 cut(s)	113, 369
MluCI	AATT	1 cut(s)	456
MlyI	GAGTC	2 cut(s)	308, 548
MnlI	CCTC	4 cut(s)	402, 516, 531, 552
MseI	TTAA	6 cut(s)	48, 156, 363, 459, 531, 649
MspA1I	CMGCKG	2 cut(s)	215, 605
MwoI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
NdeII	GATC	3 cut(s)	113, 369, 576
NlaIII	CATG	3 cut(s)	350, 397, 639
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	350, 639
NspV	TTCGAA	1 cut(s)	468
PaeI	GCATGC	2 cut(s)	350, 639
PaeR7I	CTCGAG	1 cut(s)	556
PaqCI	CACCTGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	7, 604
PleI	GAGTC	2 cut(s)	307, 548
PpsI	GAGTC	2 cut(s)	307, 548
PspPI	GGNCC	1 cut(s)	595
PspXI	VCTCGAGB	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	113, 369
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	2 cut(s)	417, 452
RsaNI	GTAC	2 cut(s)	416, 451
SaqAI	TTAA	6 cut(s)	48, 156, 363, 459, 531, 649
SatI	GCNGC	2 cut(s)	6, 603
Sau3AI	GATC	3 cut(s)	113, 369, 576
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	2 cut(s)	308, 548
SfcI	CTRYAG	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	468
SinI	GGWCC	1 cut(s)	595
SlaI	CTCGAG	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
SphI	GCATGC	2 cut(s)	350, 639
Sse9I	AATT	1 cut(s)	456
SsiI	CCGC	3 cut(s)	72, 213, 226
SspMI	CTAG	2 cut(s)	18, 126
TaaI	ACNGT	2 cut(s)	182, 257
TaiI	ACGT	3 cut(s)	103, 190, 498
TaqI	TCGA	3 cut(s)	339, 468, 557
TasI	AATT	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	6 cut(s)	48, 156, 363, 459, 531, 649
Tru9I	TTAA	6 cut(s)	48, 156, 363, 459, 531, 649
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	5, 602
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	121, 414
TspGWI	ACGGA	2 cut(s)	468, 608
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	595
XceI	RCATGY	2 cut(s)	350, 639
XhoI	CTCGAG	1 cut(s)	556
XspI	CTAG	2 cut(s)	18, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.