Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Reverse (-)

36051997 .. 36056368

Gene Structure 4372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCACCACCCGCCAGAGCCCGCGCCGATTACGATTACCTCATAAAGCTCCTCCTCATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTGCGTTTCTCTGATGGGTCCTTTACAACTAGTTTTATTACAACCATCGGTATTGATTTCAAGATAAGGACCATAGAGCTTGATGGGAAACGAATTAAATTGCAAATTTGGGATACTGCTGGTCAAGAACGATTTCGAACAATTACAACTGCTTACTACCGTGGAGCCATGGGTATTTTGCTCGTGTATGATGTCACTGATGAGTCATCATTTAACAACATTAGGAATTGGATTCGTAACATAGAACAGCATGCTTCTGACAATGTCAACAAGATCCTTGTGGGTAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTACCGACTTCAAAGGGTCAAGCACTTGCTGATGAATATGGCATCAAATTCTTTGAGACGAGTGCAAAGACAAATCTGAATGTGGAGGAGGTCTTCTTTTCAATAGCTAGGGATATCAAGCAAAGACTTGCTGATACTGACTCGAAGGCTGAGCCTCAGACAATCAGGATTAACCAACCAGACCAGGGAGCCAGTGCTGCTCAAGCTGCTCAAAAATCAGCTTGCTGTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.91

Weight (kDa)

7.65

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 147	4.3e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	2.7e-68	Ras family
Roc	PF08477	17 - 131	5.8e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 173	6.6e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	15, 25, 72
AclWI	GGATC	1 cut(s)	364
AcsI	RAATTY	2 cut(s)	201, 461
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	3 cut(s)	157, 426, 516
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	5 cut(s)	52, 175, 521, 620, 635
AluI	AGCT	5 cut(s)	52, 175, 521, 620, 635
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	5, 611, 620
ApoI	RAATTY	2 cut(s)	201, 461
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	114, 165
AsuII	TTCGAA	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	114, 165
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	598, 607
BccI	CCATC	3 cut(s)	104, 149, 173
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	2 cut(s)	126, 522
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	6, 612, 621
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	7, 613, 622
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	2 cut(s)	114, 165
BmgT120I	GGNCC	2 cut(s)	114, 165
BmiI	GGNNCC	3 cut(s)	115, 262, 604
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	499
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	256, 264, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	256, 264, 598
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	2 cut(s)	555, 584
BseNI	ACTGG	1 cut(s)	606
BseRI	GAGGAG	3 cut(s)	44, 47, 515
BseXI	GCAGC	2 cut(s)	598, 607
Bsh1236I	CGCG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	464
BsmBI	CGTCTC	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	15, 25, 72
BspCNI	CTCAG	2 cut(s)	556, 583
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	3 cut(s)	115, 262, 604
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	256, 264, 598
BssMI	GATC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	25, 348, 637
BstDEI	CTNAG	2 cut(s)	564, 570
BstDSI	CCRYGG	2 cut(s)	256, 264
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 611, 617, 620
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	598, 607
BstV2I	GAAGAC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	202
BtgI	CCRYGG	2 cut(s)	256, 264
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	291, 613
Cac8I	GCNNGC	3 cut(s)	25, 348, 637
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	114, 165
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	265, 347, 394
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	564, 570
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	114, 165
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	3 cut(s)	268, 350, 397
FaiI	YATR	8 cut(s)	47, 170, 266, 285, 338, 348, 395, 453
FatI	CATG	3 cut(s)	264, 346, 393
FauI	CCCGC	2 cut(s)	22, 32
Fnu4HI	GCNGC	3 cut(s)	6, 612, 621
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	6, 612, 621
FspBI	CTAG	2 cut(s)	126, 522
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	6, 612, 621
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	268, 350, 397
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	299, 328, 554
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	109, 355, 492, 573
Hpy188III	TCNNGA	3 cut(s)	157, 221, 580
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	101, 553
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	8, 199, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 611, 617, 620
HpyF3I	CTNAG	2 cut(s)	564, 570
Hsp92II	CATG	3 cut(s)	268, 350, 397
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	3 cut(s)	57, 260, 602
LpnPI	CCDG	7 cut(s)	31, 201, 565, 584, 606, 611, 619
Lsp1109I	GCAGC	2 cut(s)	598, 607
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	2 cut(s)	126, 522
MaeIII	GTNAC	3 cut(s)	289, 332, 380
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	1 cut(s)	499
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	6 cut(s)	189, 194, 201, 237, 322, 461
MlyI	GAGTC	2 cut(s)	308, 548
MnlI	CCTC	6 cut(s)	53, 65, 68, 493, 496, 579
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	4 cut(s)	192, 309, 585, 649
MspA1I	CMGCKG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	14, 611, 617, 620
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	3 cut(s)	268, 350, 397
NlaIV	GGNNCC	3 cut(s)	115, 262, 604
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	7, 613, 622
PleI	GAGTC	2 cut(s)	307, 548
PpsI	GAGTC	2 cut(s)	307, 548
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	115, 262, 604
PspPI	GGNCC	2 cut(s)	114, 165
PspPPI	RGGWCCY	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	4 cut(s)	192, 309, 585, 649
SatI	GCNGC	3 cut(s)	6, 612, 621
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	2 cut(s)	114, 165
SchI	GAGTC	2 cut(s)	308, 548
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	7 cut(s)	45, 54, 177, 507, 523, 622, 637
SfaNI	GCATC	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	232
SinI	GGWCC	2 cut(s)	114, 165
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SpeI	ACTAGT	1 cut(s)	125
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	6 cut(s)	189, 194, 201, 237, 322, 461
SsiI	CCGC	3 cut(s)	15, 25, 72
SspMI	CTAG	2 cut(s)	126, 522
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	232, 557
TasI	AATT	6 cut(s)	189, 194, 201, 237, 322, 461
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	4 cut(s)	192, 309, 585, 649
Tru9I	TTAA	4 cut(s)	192, 309, 585, 649
TscAI	CASTG	2 cut(s)	298, 613
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	5, 611, 620
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	414, 462
TspRI	CASTG	2 cut(s)	298, 613
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	114, 165
XapI	RAATTY	2 cut(s)	201, 461
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	126, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.