Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Reverse (-)

19876232 .. 19878792

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCTCCTCCTGCTAGAGCTCGTGCTGATTACGATTACCTCATTAAACTTCTGCTGATCGGAGACAGCGGTGTTGGTAAGAGTTGCCTTCTCTTACGTTTCTCAGATGGCTCGTTTACCACCAGTTTCATTACAACTATTGGGATTGATTTTAAGATACGGACTATTGAGCTCGATGGGAAGAGAATTAAGCTGCAAATCTGGGATACTGCCGGACAGGAGCGGTTCCGCACAATCACAACTGCGTACTACCGTGGAGCCATGGGGATTTTGCTTGTGTATGATGTGACTGATGAATCATCTTTCAACAACATCAGGAATTGGATCCGTAACATTGAGCAGCATGCTTCTGATAGTGTCAACAAGATTCTAGTTGGGAACAAAGCAGATATGGATGAAAGCAAAAGAGCTGTGCCAAAATCTAAGGGCCAAGCTCTTGCAGATGAATATGGAATGAAGTTTTTCGAGACTAGTGCCAAGACTAACTTAAACGTTGAGGAAGTTTTCTTCTCTATTGCTAAAGACATTAAGCAAAGACTTGCAGATACCGATGCACGAGCTGAGCCGCAAACAATCAAAATCAACCAATCCGACCAAGGTGCGGGAACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

8.36

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 168	6.7e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	1.3e-67	Ras family
Roc	PF08477	17 - 131	5.9e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 174	8.4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	226
AciI	CCGC	6 cut(s)	72, 226, 232, 569, 605, 642
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	322, 335
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgsI	TTSAA	1 cut(s)	310
AhlI	ACTAGT	1 cut(s)	473
AluBI	AGCT	7 cut(s)	23, 175, 196, 413, 437, 563, 620
AluI	AGCT	7 cut(s)	23, 175, 196, 413, 437, 563, 620
Alw21I	GWGCWC	2 cut(s)	25, 177
Alw26I	GTCTC	2 cut(s)	60, 464
AlwI	GGATC	2 cut(s)	322, 335
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	3 cut(s)	5, 196, 343
Asp700I	GAANNNNTTC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	25, 177
BauI	CACGAG	2 cut(s)	24, 558
Bbv12I	GWGCWC	2 cut(s)	25, 177
BbvI	GCAGC	2 cut(s)	183, 355
BccI	CCATC	2 cut(s)	104, 173
BcgI	CGANNNNNNTGC	4 cut(s)	458, 492, 584, 618
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	60, 464
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	3 cut(s)	18, 374, 474
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	6, 197, 344, 569, 643
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	5 cut(s)	7, 198, 345, 570, 644
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	230, 262, 329
BmsI	GCATC	1 cut(s)	544
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	256, 264, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	3 cut(s)	256, 264, 598
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	3 cut(s)	120, 555, 638
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	183, 355
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	25, 177
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	2 cut(s)	60, 464
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	25, 177
Bsp143I	GATC	2 cut(s)	60, 327
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	6 cut(s)	72, 226, 232, 569, 605, 642
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	119, 556, 637
BspLI	GGNNCC	3 cut(s)	230, 262, 329
BspPI	GGATC	2 cut(s)	322, 335
BsrBI	CCGCTC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	256, 264, 598
BssMI	GATC	2 cut(s)	60, 327
BssSI	CACGAG	2 cut(s)	24, 558
BssT1I	CCWWGG	2 cut(s)	264, 598
Bst2BI	CACGAG	2 cut(s)	24, 558
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	106, 426, 564, 624
BstDSI	CCRYGG	2 cut(s)	256, 264
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	63, 330
BstMAI	GTCTC	2 cut(s)	60, 464
BstMBI	GATC	2 cut(s)	60, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	350, 639
BstV1I	GCAGC	2 cut(s)	183, 355
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	2 cut(s)	256, 264
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	265, 347, 636
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	106, 426, 564, 624
DpnI	GATC	2 cut(s)	62, 329
DpnII	GATC	2 cut(s)	60, 327
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	23, 175
Eco130I	CCWWGG	2 cut(s)	264, 598
Eco24I	GRGCYC	2 cut(s)	25, 177
Eco53kI	GAGCTC	2 cut(s)	23, 175
EcoICRI	GAGCTC	2 cut(s)	23, 175
EcoT14I	CCWWGG	2 cut(s)	264, 598
EcoT38I	GRGCYC	2 cut(s)	25, 177
ErhI	CCWWGG	2 cut(s)	264, 598
FaeI	CATG	3 cut(s)	268, 350, 639
FaiI	YATR	7 cut(s)	266, 285, 348, 395, 453, 637, 649
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	3 cut(s)	264, 346, 635
FauI	CCCGC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	6, 197, 344, 569, 643
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	2 cut(s)	25, 177
Fsp4HI	GCNGC	5 cut(s)	6, 197, 344, 569, 643
FspBI	CTAG	3 cut(s)	18, 374, 474
GluI	GCNGC	5 cut(s)	6, 197, 344, 569, 643
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	3 cut(s)	268, 350, 639
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	299, 370
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	120, 364
Hpy188I	TCNGA	5 cut(s)	65, 109, 355, 595, 627
Hpy188III	TCNNGA	2 cut(s)	319, 469
Hpy8I	GTNNAC	2 cut(s)	120, 364
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	2 cut(s)	100, 495
HpyCH4V	TGCA	4 cut(s)	199, 443, 545, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	4 cut(s)	106, 426, 564, 624
HpySE526I	ACGT	2 cut(s)	100, 495
Hsp92II	CATG	3 cut(s)	268, 350, 639
Kzo9I	GATC	2 cut(s)	60, 327
LmnI	GCTCC	3 cut(s)	13, 223, 260
LpnPI	CCDG	6 cut(s)	27, 139, 190, 206, 229, 304
Lsp1109I	GCAGC	2 cut(s)	183, 355
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	3 cut(s)	18, 374, 474
MaeII	ACGT	2 cut(s)	100, 495
MaeIII	GTNAC	2 cut(s)	289, 332
MalI	GATC	2 cut(s)	62, 329
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	2 cut(s)	60, 327
MboII	GAAGA	2 cut(s)	196, 502
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	25, 177
MluCI	AATT	2 cut(s)	189, 322
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	3 cut(s)	21, 53, 493
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	5 cut(s)	48, 156, 192, 491, 531
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	60, 327
NlaIII	CATG	3 cut(s)	268, 350, 639
NlaIV	GGNNCC	3 cut(s)	230, 262, 329
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	350, 639
PaeI	GCATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	299, 370
PkrI	GCNGC	5 cut(s)	7, 198, 345, 570, 644
Psp124BI	GAGCTC	2 cut(s)	25, 177
Psp1406I	AACGTT	1 cut(s)	495
PspN4I	GGNNCC	3 cut(s)	230, 262, 329
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacI	GAGCTC	2 cut(s)	25, 177
SaqAI	TTAA	5 cut(s)	48, 156, 192, 491, 531
SatI	GCNGC	5 cut(s)	6, 197, 344, 569, 643
Sau3AI	GATC	2 cut(s)	60, 327
Sau96I	GGNCC	1 cut(s)	430
SduI	GDGCHC	2 cut(s)	25, 177
SfaNI	GCATC	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SpeI	ACTAGT	1 cut(s)	473
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	2 cut(s)	189, 322
SsiI	CCGC	6 cut(s)	72, 226, 232, 569, 605, 642
SspMI	CTAG	3 cut(s)	18, 374, 474
SstI	GAGCTC	2 cut(s)	25, 177
StyI	CCWWGG	2 cut(s)	264, 598
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	2 cut(s)	103, 498
TaqI	TCGA	2 cut(s)	177, 468
TasI	AATT	2 cut(s)	189, 322
TauI	GCSGC	2 cut(s)	571, 645
TfiI	GAWTC	2 cut(s)	299, 370
Tru1I	TTAA	5 cut(s)	48, 156, 192, 491, 531
Tru9I	TTAA	5 cut(s)	48, 156, 192, 491, 531
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	5, 196, 343
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	5 cut(s)	121, 312, 414, 462, 473
TspGWI	ACGGA	2 cut(s)	178, 320
XceI	RCATGY	2 cut(s)	350, 639
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	3 cut(s)	18, 374, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.