Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Reverse (-)

11274252 .. 11277310

Gene Structure 3059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTGCACCACCAAGGGCTCGCGCCGATTACGATTATCTGATCAAGCTCCTCCTCATTGGCGACAGTGGTGTTGGAAAGAGTTGCCTGCTTTTACGATTCTCTGATGGCTCCTTCACAACCAGTTTCATTACCACTATTGGAATTGACTTCAAGATAAGAACCATTGATCTTGATGGCAAACGAATTAAGTTGCAAATCTGGGACACAGCTGGCCAGGAAAGGTTCCGGACAATCACGACAGCTTACTATCGAGGAGCCATGGGTATTTTGTTGGTGTATGATGTAACTGATGAGTCATCTTTCAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGATAATGTCAACAAGGTACTGGTGGGAAACAAGGCTGATATGGATGAAAGCAAAAGGGCCGTGCCAGCATCTAAAGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCGAAGACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCCAGGGATATCAAGCAGAGACTTGCAGAATCTGATGCCAGGGGCACTGAGCCGCAAGCACTCAAGATGAATGAACTAGCCAATGGAGGTGGTCAAGCAGCACAAAAATCATCGTGCTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

213

Amino Acids

23.55

Weight (kDa)

7.65

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 145	8.7e-15	ADP-ribosylation factor family
Ras	PF00071	16 - 177	6.5e-68	Ras family
Roc	PF08477	16 - 130	9.6e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	48 - 172	1.8e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	1 cut(s)	369
AgsI	TTSAA	6 cut(s)	154, 307, 338, 467, 490, 513
AhlI	ACTAGT	1 cut(s)	470
AjnI	CCWGG	3 cut(s)	216, 518, 554
AluBI	AGCT	4 cut(s)	49, 212, 245, 434
AluI	AGCT	4 cut(s)	49, 212, 245, 434
Alw26I	GTCTC	1 cut(s)	529
AlwNI	CAGNNNCTG	1 cut(s)	548
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	214, 408
ApeKI	GCWGC	2 cut(s)	5, 614
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	2 cut(s)	101, 170
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	3 cut(s)	218, 520, 556
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	529
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	2 cut(s)	471, 593
BisI	GCNGC	3 cut(s)	6, 569, 615
BlsI	GCNGC	3 cut(s)	7, 570, 616
Bme1390I	CCNGG	3 cut(s)	218, 520, 556
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	112, 227, 259
BmrFI	CCNGG	3 cut(s)	218, 520, 556
BmsI	GCATC	2 cut(s)	428, 541
BpiI	GAAGAC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	14, 261, 519, 555
BsaWI	WCCGGW	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	123, 326, 375
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	218, 520, 556
BseDI	CCNNGG	4 cut(s)	14, 261, 519, 555
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	3 cut(s)	123, 326, 375
BseRI	GAGGAG	4 cut(s)	41, 44, 270, 512
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	216, 410
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	216, 410
Bsp1286I	GDGCHC	2 cut(s)	22, 563
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	42, 169
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	2 cut(s)	216, 410
BspCNI	CTCAG	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	112, 227, 259
BsrI	ACTGG	3 cut(s)	123, 326, 375
BssECI	CCNNGG	4 cut(s)	14, 261, 519, 555
BssMI	GATC	2 cut(s)	42, 169
BssT1I	CCWWGG	2 cut(s)	14, 261
Bst2UI	CCWGG	3 cut(s)	218, 520, 556
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	5 cut(s)	22, 89, 214, 417, 573
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	45, 172
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	2 cut(s)	42, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	3 cut(s)	218, 520, 556
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	216, 518, 554
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	216, 410
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	73, 561
Cac8I	GCNNGC	5 cut(s)	22, 89, 214, 417, 573
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	408
Csp6I	GTAC	1 cut(s)	368
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	2 cut(s)	262, 344
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	2 cut(s)	44, 171
DpnII	GATC	2 cut(s)	42, 169
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	14, 261
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	216, 518, 554
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	14, 261
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	14, 261
FaeI	CATG	2 cut(s)	265, 347
FaiI	YATR	5 cut(s)	263, 282, 345, 392, 450
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	261, 343
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	6, 569, 615
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	6, 569, 615
FspBI	CTAG	2 cut(s)	471, 593
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	6, 569, 615
HaeIII	GGCC	2 cut(s)	216, 410
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	265, 347
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	99, 296, 325, 545
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	42, 106, 352, 550
Hpy188III	TCNNGA	5 cut(s)	154, 173, 229, 238, 580
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	8, 196, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	265, 347
HspAI	GCGC	1 cut(s)	24
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 169
LmnI	GCTCC	3 cut(s)	54, 116, 257
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	428, 541
MaeI	CTAG	2 cut(s)	471, 593
MaeIII	GTNAC	2 cut(s)	286, 329
MalI	GATC	2 cut(s)	44, 171
MboI	GATC	2 cut(s)	42, 169
MboII	GAAGA	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	22, 563
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	2 cut(s)	144, 186
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	62, 65, 248, 490, 493, 596
Mox20I	TGGCCA	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	3 cut(s)	218, 520, 556
MvaI	CCWGG	3 cut(s)	218, 520, 556
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	42, 169
NlaIII	CATG	2 cut(s)	265, 347
NlaIV	GGNNCC	3 cut(s)	112, 227, 259
NspI	RCATGY	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	99, 325, 545
PkrI	GCNGC	3 cut(s)	7, 570, 616
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	3 cut(s)	216, 518, 554
PspGI	CCWGG	3 cut(s)	216, 518, 554
PspN4I	GGNNCC	3 cut(s)	112, 227, 259
PspPI	GGNCC	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	3 cut(s)	6, 569, 615
Sau3AI	GATC	2 cut(s)	42, 169
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	218, 520, 556
SduI	GDGCHC	2 cut(s)	22, 563
SetI	ASST	9 cut(s)	51, 214, 227, 247, 369, 430, 436, 504, 607
SfaNI	GCATC	2 cut(s)	428, 541
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	2 cut(s)	144, 186
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	2 cut(s)	471, 593
StyD4I	CCNGG	3 cut(s)	216, 518, 554
StyI	CCWWGG	2 cut(s)	14, 261
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	144, 186
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	99, 325, 545
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	73, 568
TseI	GCWGC	2 cut(s)	5, 614
TspDTI	ATGAA	4 cut(s)	118, 411, 599, 603
TspRI	CASTG	2 cut(s)	73, 568
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	2 cut(s)	471, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.