Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

25485951 .. 25488777

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G230200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGCGCCACCGGCAAGGGCTCGGGCCGATCACGATTATCTCATCAAGCTTCTCCTTATTGGCGACAGCGGTGTTGGGAAGAGTTGTCTGCTTTTGCGTTTCTCTGATGGCTCCTTCACAACAAGTTTTATCACCACTATTGGGATTGATTTCAAGATAAGAACCATCGAGCTTGATGGCAAACGGATTAAATTGCAAATCTGGGATACAGCTGGTCAGGAACGATTTCGAACAATTACTACAGCTTACTATCGAGGAGCCATGGGTATTTTGTTGGTGTATGATGTTACTGATGAGTCATCTTTCAACAACATTAGGAACTGGATTCGCAACATCGAACAACATGCTTCTGTCAGTGTCAACAAGATACTGGTGGGAAACAAAGCTGATATGGATGAAAGCAAAAGGGCTGTGCCTGCATCTAAGGGTCAAGCTCTTGCTGATGAGTATGGTATCAAGTTCCTTGAAACTAGTGCAAAGACAAACATGAATGTGGAGGAGGTTTTCTTTTCAATAGGCAGAGATATCAAGCAGAGACTTGCAGAATCTGATGCCAGGGGCACTGAGCCTCAGACACTTAGGATTAACGAACAAGACAAAGCTGCCGGTGGTCAAGCTGCACAAAAGTCATCTTGCTGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.74

Weight (kDa)

8.39

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 642
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	157, 310, 470, 516
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	8 cut(s)	52, 175, 215, 248, 389, 437, 605, 620
AluI	AGCT	8 cut(s)	52, 175, 215, 248, 389, 437, 605, 620
Alw26I	GTCTC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	4 cut(s)	5, 605, 620, 639
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	592, 607, 626
BccI	CCATC	3 cut(s)	104, 173, 176
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	6, 606, 621, 640
BlsI	GCNGC	4 cut(s)	7, 607, 622, 641
Bme1390I	CCNGG	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	115, 262
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	431, 544
Bpu14I	TTCGAA	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	264, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse118I	RCCGGY	2 cut(s)	13, 608
Bse1I	ACTGG	2 cut(s)	329, 378
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	264, 558
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	558, 587
BseNI	ACTGG	2 cut(s)	329, 378
BseRI	GAGGAG	2 cut(s)	273, 515
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	592, 607, 626
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	14, 609
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	25, 566
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	72, 642
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	559, 586
BspLI	GGNNCC	2 cut(s)	115, 262
BspT104I	TTCGAA	1 cut(s)	232
BsrFI	RCCGGY	2 cut(s)	13, 608
BsrI	ACTGG	2 cut(s)	329, 378
BssAI	RCCGGY	2 cut(s)	13, 608
BssECI	CCNNGG	2 cut(s)	264, 558
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	4 cut(s)	426, 567, 573, 581
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 419
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	592, 607, 626
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	364, 564
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	2 cut(s)	13, 608
Cfr13I	GGNCC	1 cut(s)	27
CviAII	CATG	3 cut(s)	265, 347, 490
DdeI	CTNAG	4 cut(s)	426, 567, 573, 581
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	557
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	268, 350, 493
FaiI	YATR	6 cut(s)	266, 285, 348, 395, 453, 491
FatI	CATG	3 cut(s)	264, 346, 489
Fnu4HI	GCNGC	4 cut(s)	6, 606, 621, 640
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	6, 606, 621, 640
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	4 cut(s)	6, 606, 621, 640
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	14, 609
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	268, 350, 493
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	3 cut(s)	299, 328, 548
HpaII	CCGG	2 cut(s)	14, 609
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	109, 553, 576
Hpy188III	TCNNGA	3 cut(s)	35, 157, 221
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	5 cut(s)	199, 422, 479, 545, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 419
HpyF3I	CTNAG	4 cut(s)	426, 567, 573, 581
Hsp92II	CATG	3 cut(s)	268, 350, 493
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	119, 260
Lsp1109I	GCAGC	3 cut(s)	592, 607, 626
LweI	GCATC	2 cut(s)	431, 544
MaeI	CTAG	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	2 cut(s)	25, 566
MluCI	AATT	2 cut(s)	194, 237
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	251, 493, 496, 582
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	192, 588
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	72, 215
MspI	CCGG	2 cut(s)	14, 609
MspR9I	CCNGG	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	2 cut(s)	14, 419
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	268, 350, 493
NlaIV	GGNNCC	2 cut(s)	115, 262
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	328, 548
PkrI	GCNGC	4 cut(s)	7, 607, 622, 641
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	2 cut(s)	115, 262
PspPI	GGNCC	1 cut(s)	27
PsrI	GAACNNNNNNTAC	2 cut(s)	226, 258
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	192, 588
SatI	GCNGC	4 cut(s)	6, 606, 621, 640
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	2 cut(s)	25, 566
SetI	ASST	9 cut(s)	54, 177, 217, 250, 391, 439, 507, 607, 622
SfaNI	GCATC	2 cut(s)	431, 544
SfcI	CTRYAG	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	494
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	2 cut(s)	194, 237
SsiI	CCGC	2 cut(s)	72, 642
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	1 cut(s)	264
TaqI	TCGA	4 cut(s)	171, 232, 256, 339
TasI	AATT	2 cut(s)	194, 237
TfiI	GAWTC	2 cut(s)	328, 548
Tru1I	TTAA	2 cut(s)	192, 588
Tru9I	TTAA	2 cut(s)	192, 588
TscAI	CASTG	2 cut(s)	364, 571
TseI	GCWGC	4 cut(s)	5, 605, 620, 639
TspDTI	ATGAA	2 cut(s)	414, 506
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	364, 571
XceI	RCATGY	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.