Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

13373484 .. 13377889

Gene Structure 4406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG156900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCGAGCAGGAGTGTTCACCATTATGGATGGTGTTGGTAAGAGTTGCCTTCTCTTGCGTTTCTCTGATGGGTCCTTTACAACTAGTTTTATTACAACCATCGGTATTGATTTCAAGATAAGGACCATAGAGCTTGATGGGAAACGAATTAAATTGCAAATTTGGGATACTGCTGGTCAAGAACGATTTCGAACAATTACAACTGCTTACTACCGTGGAGCCATGGGTATTTTGCTCGTGTATGATGTCACTGATGAGTCATCATTTAACAACATTAGGAATTGGATTCGTAACATAGAACAGCATGCTTCTGACAATGTCAACAAGATCCTTGTGGGTAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTACCGACTTCAAAGGGTCAAGCACTTGCTGATGAATATGGCATCAAATTCTTTGAGACAAGTGCAAAGACAAATCTGAATGTGGAGGAGGTCTTCTTTTCAATAGCTAGGGATATCAAGCAAAGACTTGCTGATACTGACTCGAAGGCTGAGCCTCAGACAATCAGGATCAACCAACCAGACCAGGGAGCCGGTGCTGCTCAAGCTGCTCAAAAATCAGCTTGCTGTGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

202

Amino Acids

22.39

Weight (kDa)

7.66

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 133	3.4e-14	ADP-ribosylation factor family
Ras	PF00071	11 - 164	5.7e-64	Ras family
Roc	PF08477	11 - 117	2.2e-30	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	35 - 159	5.5e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	322, 548
AcsI	RAATTY	2 cut(s)	159, 419
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	115, 384, 474
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	4 cut(s)	133, 479, 578, 593
AluI	AGCT	4 cut(s)	133, 479, 578, 593
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	322, 548
ApeKI	GCWGC	2 cut(s)	569, 578
ApoI	RAATTY	2 cut(s)	159, 419
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	72, 123
AsuHPI	GGTGA	1 cut(s)	10
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	72, 123
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	556, 565
BccI	CCATC	4 cut(s)	23, 62, 107, 131
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	422
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 480
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	570, 579
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	2 cut(s)	571, 580
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	2 cut(s)	72, 123
BmgT120I	GGNCC	2 cut(s)	72, 123
BmiI	GGNNCC	3 cut(s)	73, 220, 562
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	214, 222, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	3 cut(s)	214, 222, 556
BseGI	GGATG	2 cut(s)	34, 361
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	513, 542
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	556, 565
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	327, 540
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	514, 541
BspLI	GGNNCC	3 cut(s)	73, 220, 562
BspPI	GGATC	2 cut(s)	322, 548
BspT104I	TTCGAA	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	214, 222, 556
BssMI	GATC	2 cut(s)	327, 540
BssSI	CACGAG	1 cut(s)	236
BssT1I	CCWWGG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	6, 306, 595
BstDEI	CTNAG	2 cut(s)	522, 528
BstDSI	CCRYGG	2 cut(s)	214, 222
BstF5I	GGATG	2 cut(s)	34, 361
BstKTI	GATC	2 cut(s)	330, 543
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	327, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 575, 578
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	556, 565
BstV2I	GAAGAC	1 cut(s)	457
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	160
BtgI	CCRYGG	2 cut(s)	214, 222
BtsCI	GGATG	2 cut(s)	34, 361
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	6, 306, 595
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	72, 123
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	3 cut(s)	223, 305, 352
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	522, 528
DpnI	GATC	2 cut(s)	329, 542
DpnII	GATC	2 cut(s)	327, 540
Eco130I	CCWWGG	1 cut(s)	222
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	72, 123
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	226, 308, 355
FaiI	YATR	8 cut(s)	26, 128, 224, 243, 296, 306, 353, 411
FatI	CATG	3 cut(s)	222, 304, 351
Fnu4HI	GCNGC	2 cut(s)	570, 579
FokI	GGATG	2 cut(s)	41, 368
Fsp4HI	GCNGC	2 cut(s)	570, 579
FspBI	CTAG	2 cut(s)	84, 480
GluI	GCNGC	2 cut(s)	570, 579
HapII	CCGG	1 cut(s)	564
Hin1II	CATG	3 cut(s)	226, 308, 355
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	3 cut(s)	257, 286, 512
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	18, 322
Hpy188I	TCNGA	4 cut(s)	67, 313, 450, 531
Hpy188III	TCNNGA	3 cut(s)	115, 179, 538
Hpy8I	GTNNAC	2 cut(s)	18, 322
HpyAV	CCTTC	2 cut(s)	59, 511
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	157, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 575, 578
HpyF3I	CTNAG	2 cut(s)	522, 528
Hsp92II	CATG	3 cut(s)	226, 308, 355
Kzo9I	GATC	2 cut(s)	327, 540
LmnI	GCTCC	2 cut(s)	218, 560
LpnPI	CCDG	6 cut(s)	159, 523, 542, 564, 569, 577
Lsp1109I	GCAGC	2 cut(s)	556, 565
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	84, 480
MaeIII	GTNAC	3 cut(s)	247, 290, 338
MalI	GATC	2 cut(s)	329, 542
MboI	GATC	2 cut(s)	327, 540
MboII	GAAGA	1 cut(s)	457
MflI	RGATCY	1 cut(s)	327
MluCI	AATT	6 cut(s)	147, 152, 159, 195, 280, 419
MlyI	GAGTC	2 cut(s)	266, 506
MnlI	CCTC	3 cut(s)	451, 454, 537
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	3 cut(s)	150, 267, 607
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	569, 575, 578
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	2 cut(s)	327, 540
NlaIII	CATG	3 cut(s)	226, 308, 355
NlaIV	GGNNCC	3 cut(s)	73, 220, 562
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	571, 580
PleI	GAGTC	2 cut(s)	265, 506
PpsI	GAGTC	2 cut(s)	265, 506
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	73, 220, 562
PspPI	GGNCC	2 cut(s)	72, 123
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	327
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	150, 267, 607
SatI	GCNGC	2 cut(s)	570, 579
Sau3AI	GATC	2 cut(s)	327, 540
Sau96I	GGNCC	2 cut(s)	72, 123
SchI	GAGTC	2 cut(s)	266, 506
ScrFI	CCNGG	1 cut(s)	557
SetI	ASST	5 cut(s)	135, 465, 481, 580, 595
SfaNI	GCATC	1 cut(s)	423
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	2 cut(s)	72, 123
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
SpeI	ACTAGT	1 cut(s)	83
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	6 cut(s)	147, 152, 159, 195, 280, 419
SspMI	CTAG	2 cut(s)	84, 480
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	190, 515
TasI	AATT	6 cut(s)	147, 152, 159, 195, 280, 419
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	150, 267, 607
Tru9I	TTAA	3 cut(s)	150, 267, 607
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	569, 578
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	372, 420
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	72, 123
XapI	RAATTY	2 cut(s)	159, 419
XceI	RCATGY	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	2 cut(s)	84, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.