Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

20652043 .. 20654632

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTACTTTGCAACCGACTAGGGCTCGGGCGGATCACGACTATCTCATCAAGCTTCTCCTCATTGGCGACAGTGGTGTTGGCAAGAGTTGTCTGCTTTTGCGTTTCTCTGATGGCTCCTTTACAACAAGTTTTATCACCACTATTGGGATTGATTTCAAGATAAGAACAATTGAGCTTGATGGCAAACGGATTAAATTGCAAATCTGGGATACGGCTGGTCAAGAACGATTTCGAACAATTACAACAGCTTACTATCGAGGAGCCATGGGTATTTTGTTGGTGTATGATGTTACTGATGAGTCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAGCAGCATGCTTCTGTCAATGTCAACAAGATTCTGGTGGGGAACAAAGCTGATATGGATGAAAGCAGAAGGGCTGTGCCGACGTCTAGGGGTCAAGCTCTTGCTGACGAGTATGGTATCAAGTTCTTTGAGACTAGTGCAAAGACGAACCTGAACGTGGAGGAGGTCTTCTTTTCTATAGCCAGGGATATTAAACAGAGACTCGCAGAATCTGATGCCAGGGGCACTGAGCCTCAGACACTTAGGATTAACGAACCAGACAGAGCCGATGGCCAAGCTGCACAAAAGTCATCTTGCTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

24.08

Weight (kDa)

7.69

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	428
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	613
AcyI	GRCGYC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	147, 499
AgsI	TTSAA	2 cut(s)	160, 313
AhlI	ACTAGT	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	524, 560
AluBI	AGCT	6 cut(s)	55, 178, 251, 392, 440, 620
AluI	AGCT	6 cut(s)	55, 178, 251, 392, 440, 620
Alw26I	GTCTC	2 cut(s)	467, 535
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	2 cut(s)	346, 620
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	358, 607
BccI	CCATC	3 cut(s)	107, 176, 605
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	526, 562
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	467, 535
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	21, 429, 477
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	347, 621
BlsI	GCNGC	2 cut(s)	348, 622
Bme1390I	CCNGG	2 cut(s)	526, 562
BmeT110I	CYCGRG	1 cut(s)	27
BmiI	GGNNCC	2 cut(s)	118, 265
BmrFI	CCNGG	2 cut(s)	526, 562
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	502
Bpu14I	TTCGAA	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	267, 525, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 499
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	526, 562
BseDI	CCNNGG	3 cut(s)	267, 525, 561
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	147, 499
BseMII	CTCAG	2 cut(s)	561, 590
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	3 cut(s)	50, 276, 518
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	358, 607
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	147, 499
BsmAI	GTCTC	2 cut(s)	467, 535
BsnI	GGCC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	28, 569
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	2 cut(s)	562, 589
BspLI	GGNNCC	2 cut(s)	118, 265
BspPI	GGATC	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	267, 525, 561
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	526, 562
Bst4CI	ACNGT	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	3 cut(s)	570, 576, 584
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	467, 535
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	2 cut(s)	526, 562
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	524, 560
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	358, 607
BstV2I	GAAGAC	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	79, 567
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	554
CviAII	CATG	2 cut(s)	268, 350
DdeI	CTNAG	3 cut(s)	570, 576, 584
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	613
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	524, 560
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	271, 353
FaiI	YATR	6 cut(s)	269, 288, 351, 398, 456, 521
FatI	CATG	2 cut(s)	267, 349
Fnu4HI	GCNGC	2 cut(s)	347, 621
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	347, 621
FspBI	CTAG	3 cut(s)	21, 429, 477
GluI	GCNGC	2 cut(s)	347, 621
HaeIII	GGCC	1 cut(s)	615
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	271, 353
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	5 cut(s)	302, 331, 373, 543, 551
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	3 cut(s)	112, 556, 579
Hpy188III	TCNNGA	3 cut(s)	38, 160, 224
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	425, 498
HpyCH4V	TGCA	4 cut(s)	13, 202, 482, 623
HpyF3I	CTNAG	3 cut(s)	570, 576, 584
HpySE526I	ACGT	2 cut(s)	425, 498
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	271, 353
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	122, 263
Lsp1109I	GCAGC	2 cut(s)	358, 607
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	3 cut(s)	21, 429, 477
MaeII	ACGT	2 cut(s)	425, 498
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	502
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	28, 569
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	3 cut(s)	171, 197, 240
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	2 cut(s)	311, 537
MnlI	CCTC	5 cut(s)	71, 254, 496, 499, 585
Mox20I	TGGCCA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	3 cut(s)	195, 534, 591
Msp20I	TGGCCA	1 cut(s)	615
MspR9I	CCNGG	2 cut(s)	526, 562
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	2 cut(s)	526, 562
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	271, 353
NlaIV	GGNNCC	2 cut(s)	118, 265
NspI	RCATGY	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	235
PaeI	GCATGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	331, 373, 551
PkrI	GCNGC	2 cut(s)	348, 622
PleI	GAGTC	2 cut(s)	310, 537
PpsI	GAGTC	2 cut(s)	310, 537
Psp6I	CCWGG	2 cut(s)	524, 560
PspGI	CCWGG	2 cut(s)	524, 560
PspN4I	GGNNCC	2 cut(s)	118, 265
PstNI	CAGNNNCTG	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	195, 534, 591
SatI	GCNGC	2 cut(s)	347, 621
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	311, 537
ScrFI	CCNGG	2 cut(s)	526, 562
SduI	GDGCHC	2 cut(s)	28, 569
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	235
SpeI	ACTAGT	1 cut(s)	476
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	3 cut(s)	171, 197, 240
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	3 cut(s)	21, 429, 477
StyD4I	CCNGG	2 cut(s)	524, 560
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	428, 501
TaqI	TCGA	2 cut(s)	235, 259
TasI	AATT	3 cut(s)	171, 197, 240
TfiI	GAWTC	3 cut(s)	331, 373, 551
Tru1I	TTAA	3 cut(s)	195, 534, 591
Tru9I	TTAA	3 cut(s)	195, 534, 591
TscAI	CASTG	2 cut(s)	79, 574
TseI	GCWGC	2 cut(s)	346, 620
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	79, 574
XceI	RCATGY	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	3 cut(s)	21, 429, 477
ZraI	GACGTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.