Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Reverse (-)

24107215 .. 24109524

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCTCCACCTGCTAGAGCTAGAGCCGATTATGATTATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTTGGTAAAAGTTGTTTGCTTCTAAGGTTCTCTGATGGCTCTTTCACCACTAGCTTCATCACTACCATTGGTATTGATTTTAAGATAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTTCAGATTTGGGACACTGCTGGTCAAGAACGTTTTCGAACCATCACCACTGCTTATTACCGCGGGGCAATGGGGATTTTACTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGAAACTGGATTCGTAATATTGAACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGAAACAAAGCTGATATGGACGAGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCACTTGCTGACGAATATGGAATCAAGTTCTTTGAAACAAGTGCCAAAACTAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACATAAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCAAACAGACCAGGCTGCTGGAGCCGGACAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

8.36

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 165	4.5e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	5.1e-68	Ras family
Roc	PF08477	17 - 131	5.8e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 174	3.7e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccII	CGCG	1 cut(s)	258
AciI	CCGC	3 cut(s)	72, 256, 258
AclI	AACGTT	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	182, 336
AgsI	TTSAA	3 cut(s)	310, 341, 470
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	6 cut(s)	23, 52, 129, 175, 196, 389
AluI	AGCT	6 cut(s)	23, 52, 129, 175, 196, 389
Alw26I	GTCTC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	5, 602
Asp700I	GAANNNNTTC	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	77, 112, 232
AsuII	TTCGAA	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	104, 173, 245
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	4 cut(s)	18, 24, 126, 558
BfuAI	ACCTGC	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	2 cut(s)	6, 603
BlsI	GCNGC	2 cut(s)	7, 604
Bme1390I	CCNGG	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	282, 329
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	282, 329
BseXI	GCAGC	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	576, 582
BspACI	CCGC	3 cut(s)	72, 256, 258
BspANI	GGCC	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	282, 329
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	576, 582
Bst2UI	CCWGG	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	348, 570, 637
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	579, 585
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	576, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	2 cut(s)	210, 243
BtsIMutI	CAGTG	2 cut(s)	210, 243
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	3 cut(s)	348, 570, 637
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr42I	CCGCGG	1 cut(s)	259
CviAII	CATG	1 cut(s)	636
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	2 cut(s)	578, 584
DpnII	GATC	2 cut(s)	576, 582
Eco57I	CTGAAG	2 cut(s)	182, 336
EcoRII	CCWGG	1 cut(s)	597
FaeI	CATG	1 cut(s)	639
FaiI	YATR	7 cut(s)	36, 285, 395, 453, 518, 530, 637
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	635
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	6, 603
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	6, 603
FspBI	CTAG	4 cut(s)	18, 24, 126, 558
GluI	GCNGC	2 cut(s)	6, 603
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	612
Hin1II	CATG	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	50, 194
HinfI	GANTC	5 cut(s)	299, 328, 456, 540, 554
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	3 cut(s)	77, 112, 232
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	109, 201, 355, 492
Hpy188III	TCNNGA	3 cut(s)	221, 558, 580
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	187, 226
HpyCH4V	TGCA	2 cut(s)	572, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	187, 226
Hsp92II	CATG	1 cut(s)	639
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	576, 582
LmnI	GCTCC	2 cut(s)	13, 608
Lsp1109I	GCAGC	1 cut(s)	589
MaeI	CTAG	4 cut(s)	18, 24, 126, 558
MaeII	ACGT	2 cut(s)	187, 226
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	578, 584
MboI	GATC	2 cut(s)	576, 582
MboII	GAAGA	3 cut(s)	47, 502, 512
MlyI	GAGTC	3 cut(s)	308, 534, 548
MnlI	CCTC	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	48, 156, 649
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	4 cut(s)	14, 569, 608, 617
NdeII	GATC	2 cut(s)	576, 582
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	639
NspV	TTCGAA	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	328, 456
PkrI	GCNGC	2 cut(s)	7, 604
PleI	GAGTC	3 cut(s)	307, 534, 548
PpsI	GAGTC	3 cut(s)	307, 534, 548
Psp1406I	AACGTT	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	569
SacII	CCGCGG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	48, 156, 649
SatI	GCNGC	2 cut(s)	6, 603
Sau3AI	GATC	2 cut(s)	576, 582
SchI	GAGTC	3 cut(s)	308, 534, 548
ScrFI	CCNGG	1 cut(s)	599
Sfr303I	CCGCGG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	259
SphI	GCATGC	1 cut(s)	639
SsiI	CCGC	3 cut(s)	72, 256, 258
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	4 cut(s)	18, 24, 126, 558
StyD4I	CCNGG	1 cut(s)	597
TaiI	ACGT	2 cut(s)	190, 229
TaqI	TCGA	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	328, 456
Tru1I	TTAA	3 cut(s)	48, 156, 649
Tru9I	TTAA	3 cut(s)	48, 156, 649
TscAI	CASTG	2 cut(s)	217, 250
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	5, 602
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	2 cut(s)	217, 250
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	4 cut(s)	18, 24, 126, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.