FvH4_6g14360

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002726
Physical Location & Seq
Forward (+)
8808240 .. 8812594
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14360.t1

Sequence Viewer

Length: 651 bp
ATGGCTGCACCACCTGCCCGAGCTCGAGCTGATTACGATTACCTCATTAAGCTCCTCCTCATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTCTGCGTTTCTCTGATGGGTCCTTTACAACTAGTTTTATTACAACCATCGGTATTGATTTCAAGATAAGGACCATAGAGCTTGATGGAAAAAGAATTAAATTGCAAATTTGGGATACTGCTGGTCAAGAACGATTTCGAACAATTACAACTGCTTACTATCGTGGAGCCATGGGTATTTTGCTCGTGTATGATGTCACTGATGAGTCATCATTTAACAACATTAGGAATTGGATTCGTAACATAGAACAACATGCTTCTGATAATGTCAACAAGATCCTTGTTGGTAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTACCGACTTCAAAGGGTCAAGCACTTGCTGATGAATATGGCATCAAATTCTTTGAGACAAGTGCAAAGACAAATCTGAATGTGGAGGAGGTCTTCTTTTCAATAGCTCGGGATATTAAGCAAAGACTTGCTGATACTGACTCGAAGGCTGAGCCTCAGACAATCAGGATTAACCAACCAGACCAGGGAGCCGGGGCTGCTCAAGCTGCCCAAAAATCAGCCTGCTGTGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

217

Amino Acids

23.88

Weight (kDa)

7.65

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 16 - 147 4.3e-15 ADP-ribosylation factor family
Ras PF00071 17 - 178 2.7e-68 Ras family
Roc PF08477 17 - 131 5.8e-35 Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU PF00009 49 - 173 6.6e-07 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 201, 461
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 599
AgsI TTSAA 3 cut(s) 157, 426, 516
AhlI ACTAGT 1 cut(s) 125
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 6 cut(s) 23, 29, 52, 175, 521, 620
AluI AGCT 6 cut(s) 23, 29, 52, 175, 521, 620
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 1 cut(s) 364
Ama87I CYCGRG 3 cut(s) 18, 24, 522
ApeKI GCWGC 3 cut(s) 5, 611, 620
ApoI RAATTY 2 cut(s) 201, 461
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 114, 165
AsuC2I CCSGG 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 232
AvaI CYCGRG 3 cut(s) 18, 24, 522
AvaII GGWCC 2 cut(s) 114, 165
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 598, 607
BccI CCATC 3 cut(s) 104, 149, 173
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 125
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 22
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 3 cut(s) 6, 612, 621
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 3 cut(s) 7, 613, 622
Bme1390I CCNGG 2 cut(s) 599, 607
Bme18I GGWCC 2 cut(s) 114, 165
BmeT110I CYCGRG 3 cut(s) 18, 24, 522
BmgT120I GGNCC 2 cut(s) 114, 165
BmiI GGNNCC 3 cut(s) 115, 262, 604
BmrFI CCNGG 2 cut(s) 599, 607
BmsI GCATC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 499
Bpu1102I GCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 264, 598, 606
Bsc4I CCNNNNNNNGG 1 cut(s) 599
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 3 cut(s) 264, 598, 606
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMII CTCAG 2 cut(s) 555, 584
BseRI GAGGAG 3 cut(s) 44, 47, 515
BseXI GCAGC 2 cut(s) 598, 607
BsiHKAI GWGCWC 1 cut(s) 25
BsiHKCI CYCGRG 3 cut(s) 18, 24, 522
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 1 cut(s) 464
BsoBI CYCGRG 3 cut(s) 18, 24, 522
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 369
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 556, 583
BspLI GGNNCC 3 cut(s) 115, 262, 604
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 364
BspT104I TTCGAA 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 264, 598, 606
BssMI GATC 1 cut(s) 369
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 637
BstDEI CTNAG 2 cut(s) 564, 570
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 1 cut(s) 369
BstMWI GCNNNNNNNGC 4 cut(s) 14, 611, 617, 620
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 597, 605
BstV1I GCAGC 2 cut(s) 598, 607
BstV2I GAAGAC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 637
Cfr13I GGNCC 2 cut(s) 114, 165
Csp6I GTAC 1 cut(s) 416
CviAII CATG 3 cut(s) 265, 347, 394
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 2 cut(s) 564, 570
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 114, 165
Eco53kI GAGCTC 1 cut(s) 23
Eco88I CYCGRG 3 cut(s) 18, 24, 522
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 268, 350, 397
FaiI YATR 7 cut(s) 170, 266, 285, 338, 348, 395, 453
FatI CATG 3 cut(s) 264, 346, 393
Fnu4HI GCNGC 3 cut(s) 6, 612, 621
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 6, 612, 621
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 6, 612, 621
HapII CCGG 1 cut(s) 606
Hin1II CATG 3 cut(s) 268, 350, 397
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 299, 328, 554
HpaII CCGG 1 cut(s) 606
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 109, 355, 492, 573
Hpy188III TCNNGA 4 cut(s) 157, 221, 524, 580
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 101, 553
HpyCH4V TGCA 3 cut(s) 8, 199, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 611, 617, 620
HpyF3I CTNAG 2 cut(s) 564, 570
Hsp92II CATG 3 cut(s) 268, 350, 397
Kzo9I GATC 1 cut(s) 369
LmnI GCTCC 3 cut(s) 57, 260, 602
LpnPI CCDG 7 cut(s) 27, 201, 565, 584, 606, 611, 619
Lsp1109I GCAGC 2 cut(s) 598, 607
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 289, 332, 380
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 2 cut(s) 86, 499
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 6 cut(s) 189, 194, 201, 237, 322, 461
MlyI GAGTC 2 cut(s) 308, 548
MnlI CCTC 6 cut(s) 53, 65, 68, 493, 496, 579
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 6 cut(s) 48, 192, 309, 531, 585, 649
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 599, 607
MvaI CCWGG 1 cut(s) 599
MwoI GCNNNNNNNGC 4 cut(s) 14, 611, 617, 620
NciI CCSGG 1 cut(s) 607
NcoI CCATGG 1 cut(s) 264
NdeII GATC 1 cut(s) 369
NlaIII CATG 3 cut(s) 268, 350, 397
NlaIV GGNNCC 3 cut(s) 115, 262, 604
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 1 cut(s) 350
NspV TTCGAA 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 24
PaqCI CACCTGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 7, 613, 622
PleI GAGTC 2 cut(s) 307, 548
PpsI GAGTC 2 cut(s) 307, 548
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 115, 262, 604
PspPI GGNCC 2 cut(s) 114, 165
PspPPI RGGWCCY 1 cut(s) 114
PspXI VCTCGAGB 1 cut(s) 24
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 6 cut(s) 48, 192, 309, 531, 585, 649
SatI GCNGC 3 cut(s) 6, 612, 621
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 2 cut(s) 114, 165
SchI GAGTC 2 cut(s) 308, 548
ScrFI CCNGG 2 cut(s) 599, 607
SduI GDGCHC 1 cut(s) 25
SetI ASST 9 cut(s) 16, 25, 31, 45, 54, 177, 507, 523, 622
SfaNI GCATC 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 2 cut(s) 114, 165
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 2 cut(s) 24, 615
SmoI CTYRAG 2 cut(s) 24, 615
SpeI ACTAGT 1 cut(s) 125
Sse9I AATT 6 cut(s) 189, 194, 201, 237, 322, 461
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 597, 605
StyI CCWWGG 1 cut(s) 264
TaqI TCGA 3 cut(s) 25, 232, 557
TasI AATT 6 cut(s) 189, 194, 201, 237, 322, 461
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 6 cut(s) 48, 192, 309, 531, 585, 649
Tru9I TTAA 6 cut(s) 48, 192, 309, 531, 585, 649
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 5, 611, 620
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 414, 462
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 114, 165
XapI RAATTY 2 cut(s) 201, 461
XceI RCATGY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.