Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

17259553 .. 17262835

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21670.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGCAGCACCAAGGGCTCGCGCCGATTACGATTATCTGATCAAGCTCCTCCTCATTGGCGACAGTGGCGTTGGAAAGAGTTGCCTGCTTTTACGGTTTTCTGATGGCTCCTTCACAACCAGTTTCATTACCACTATTGGAATTGACTTCAAGATAAGAACCATTGAGCTTGATGGCAAACGGATTAAGTTGCAAATTTGGGATACAGCTGGCCAGGAACGGTTCCGGACAATCACAACAGCTTACTATCGAGGAGCCATGGGTATTTTGTTGGTCTATGATGTAACTGATGAGTCATCTTTCAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGGTACTGGTGGGAAACAAGGCTGACATGGATGAAAGCAAAAGGGCTGTGCCTGCATCTAAAGGTCAAGCTCTTGCTGATGAGTATGGCATCAAGTTCTTTGAAACTAGCGCAAAGACAAACTTGAACGTGGAGGAGGTTTTCTTTTCAATGGCCAGGGATATCAAGCAGAGACTGGCAGAATCTGATTCCAGGGGCACTGAGCCGCAATCACTCAAGATGAATGAACCTGGAGGGGGTCAAGCAGCACAAAGTTCATCATGCTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

212

Amino Acids

23.34

Weight (kDa)

6.61

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	15 - 144	4.7e-15	ADP-ribosylation factor family
Ras	PF00071	16 - 177	5e-68	Ras family
Roc	PF08477	16 - 130	7.5e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	48 - 170	9.4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	569
AcoI	YGGCCR	2 cut(s)	214, 516
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	6 cut(s)	154, 307, 338, 467, 490, 513
AjnI	CCWGG	4 cut(s)	216, 518, 554, 592
AluBI	AGCT	5 cut(s)	49, 172, 212, 245, 434
AluI	AGCT	5 cut(s)	49, 172, 212, 245, 434
Alw26I	GTCTC	1 cut(s)	529
AlwNI	CAGNNNCTG	2 cut(s)	538, 548
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	2 cut(s)	214, 516
ApeKI	GCWGC	3 cut(s)	5, 8, 608
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	26, 476
BaeGI	GKGCMC	1 cut(s)	563
BalI	TGGCCA	2 cut(s)	216, 518
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	20, 620
BccI	CCATC	2 cut(s)	101, 170
BciT130I	CCWGG	4 cut(s)	218, 520, 556, 594
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	4 cut(s)	6, 9, 569, 609
BlsI	GCNGC	4 cut(s)	7, 10, 570, 610
Bme1390I	CCNGG	4 cut(s)	218, 520, 556, 594
BmiI	GGNNCC	3 cut(s)	112, 227, 259
BmrFI	CCNGG	4 cut(s)	218, 520, 556, 594
BmsI	GCATC	2 cut(s)	428, 462
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	14, 261, 519, 555
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse1I	ACTGG	4 cut(s)	123, 326, 375, 543
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	4 cut(s)	218, 520, 556, 594
BseDI	CCNNGG	4 cut(s)	14, 261, 519, 555
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	4 cut(s)	123, 326, 375, 543
BseRI	GAGGAG	4 cut(s)	41, 44, 270, 512
BseSI	GKGCMC	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	20, 620
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	216, 518
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	216, 518
Bsp1286I	GDGCHC	2 cut(s)	22, 563
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	2 cut(s)	216, 518
BspCNI	CTCAG	1 cut(s)	556
BspEI	TCCGGA	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	112, 227, 259
BspMAI	CTGCAG	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	123, 326, 375, 543
BssECI	CCNNGG	4 cut(s)	14, 261, 519, 555
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	14, 261
Bst2UI	CCWGG	4 cut(s)	218, 520, 556, 594
Bst4CI	ACNGT	3 cut(s)	68, 99, 225
BstC8I	GCNNGC	4 cut(s)	22, 89, 214, 417
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	26, 476
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 69, 416
BstNI	CCWGG	4 cut(s)	218, 520, 556, 594
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	216, 518, 554, 592
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	563
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	20, 620
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	216, 518
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	73, 561
Cac8I	GCNNGC	4 cut(s)	22, 89, 214, 417
CaiI	CAGNNNCTG	2 cut(s)	538, 548
CfoI	GCGC	2 cut(s)	26, 476
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	4 cut(s)	262, 344, 391, 624
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EaeI	YGGCCR	2 cut(s)	214, 516
Eco130I	CCWWGG	2 cut(s)	14, 261
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	526
EcoRII	CCWGG	4 cut(s)	216, 518, 554, 592
EcoRV	GATATC	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	14, 261
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	14, 261
FaeI	CATG	4 cut(s)	265, 347, 394, 627
FaiI	YATR	6 cut(s)	263, 282, 345, 392, 450, 625
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	4 cut(s)	261, 343, 390, 623
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	6, 9, 569, 609
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	6, 9, 569, 609
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	25, 475
GluI	GCNGC	4 cut(s)	6, 9, 569, 609
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	216, 518
HapII	CCGG	1 cut(s)	229
HhaI	GCGC	2 cut(s)	26, 476
Hin1II	CATG	4 cut(s)	265, 347, 394, 627
Hin6I	GCGC	2 cut(s)	24, 474
HinP1I	GCGC	2 cut(s)	24, 474
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	4 cut(s)	296, 325, 545, 551
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	42, 106, 352, 550
Hpy188III	TCNNGA	3 cut(s)	154, 229, 580
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	68, 99, 225
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	3 cut(s)	8, 196, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 69, 416
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	265, 347, 394, 627
HspAI	GCGC	2 cut(s)	24, 474
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	54, 116, 257
Lsp1109I	GCAGC	2 cut(s)	20, 620
LweI	GCATC	2 cut(s)	428, 462
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	286, 329
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MhlI	GDGCHC	2 cut(s)	22, 563
MlsI	TGGCCA	2 cut(s)	216, 518
MluCI	AATT	2 cut(s)	144, 198
MluNI	TGGCCA	2 cut(s)	216, 518
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	62, 65, 248, 490, 493, 590
Mox20I	TGGCCA	2 cut(s)	216, 518
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	2 cut(s)	216, 518
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	2 cut(s)	216, 518
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	4 cut(s)	218, 520, 556, 594
MvaI	CCWGG	4 cut(s)	218, 520, 556, 594
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	17, 69, 416
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	4 cut(s)	265, 347, 394, 627
NlaIV	GGNNCC	3 cut(s)	112, 227, 259
NspI	RCATGY	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	325, 545, 551
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	7, 10, 570, 610
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	4 cut(s)	216, 518, 554, 592
PspGI	CCWGG	4 cut(s)	216, 518, 554, 592
PspN4I	GGNNCC	3 cut(s)	112, 227, 259
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	2 cut(s)	538, 548
PsyI	GACNNNGTC	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	6, 9, 569, 609
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	4 cut(s)	218, 520, 556, 594
SduI	GDGCHC	2 cut(s)	22, 563
SfaNI	GCATC	2 cut(s)	428, 462
SfcI	CTRYAG	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	144, 198
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	4 cut(s)	216, 518, 554, 592
StyI	CCWWGG	2 cut(s)	14, 261
TaaI	ACNGT	3 cut(s)	68, 99, 225
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	253
TasI	AATT	2 cut(s)	144, 198
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	325, 545, 551
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	73, 568
TseI	GCWGC	3 cut(s)	5, 8, 608
TspDTI	ATGAA	5 cut(s)	118, 411, 599, 603, 609
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	73, 568
Tth111I	GACNNNGTC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.