Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012351.1

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

63302 .. 68218

Gene Structure 4917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012351.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgcagcttttcagccgttttggggttcacggttgttggagttgtggtagcgaggcttcgggatgcagtgacgacgttggctatgccagcacaggacgtggctgtgatgggcggctacatgggacgaagatgacgggtttgggccgattttgcttaggctttgggtttattgccatcagtgttttctatttctgtggctttgggattcctttcgccatggctgcaccacccgccagagctcgcgccgattacgattacctcataaagctcctcctcatcggcgacagcggtgttggtaagagttgccttctcttgcgtttctctgatgggtcctttacaactagttttattacaaccatcggtattgatttcaagataaggaccatagagcttgatgggaaacgaattaaattgcaaatttgggatactgctggtcaagaacgatttcgaacaattacaactgcttactaccgtggagccatgggtattttgctcgtgtatgatgtcactgatgagtcatcatttaacaacattaggaattggattcgtaacatagaacagcatgcttctgacaatgtcaacaagatccttgtgggtaacaaggctgacatggatgaaagcaaaagggctgtaccgacttcaaagggtcaagcacttgctgatgaatatggcatcaaattctttgagacaagtgcaaagacaaatctgaatgtggaggaggtcttcttttcaatagctagggatatcaagcaaagacttgctgatactgactcgaaggctgagcctcagacaatcaggatcaaccaaccagaccagggagccggtgctgctcaagctgctcaaaaatcagcttgctgtggttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

288

Amino Acids

31.47

Weight (kDa)

8.03

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	3 cut(s)	112, 231, 288
AclWI	GGATC	2 cut(s)	580, 806
AcsI	RAATTY	2 cut(s)	417, 677
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	22, 815
AgsI	TTSAA	3 cut(s)	373, 642, 732
AhlI	ACTAGT	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	813
AluBI	AGCT	7 cut(s)	7, 239, 268, 391, 737, 836, 851
AluI	AGCT	7 cut(s)	7, 239, 268, 391, 737, 836, 851
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	680
AlwI	GGATC	2 cut(s)	580, 806
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	4, 221, 827, 836
ApoI	RAATTY	2 cut(s)	417, 677
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	3 cut(s)	142, 330, 381
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	330, 381
BanII	GRGCYC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	16, 208, 814, 823
BccI	CCATC	5 cut(s)	101, 182, 320, 365, 389
BciT130I	CCWGG	1 cut(s)	815
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	680
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	2 cut(s)	342, 738
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	5 cut(s)	5, 113, 222, 828, 837
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	5 cut(s)	6, 114, 223, 829, 838
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	2 cut(s)	330, 381
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	142, 330, 381
BmiI	GGNNCC	3 cut(s)	331, 478, 820
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	2 cut(s)	53, 681
BpiI	GAAGAC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	216, 472, 480, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 815
Bse118I	RCCGGY	1 cut(s)	821
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	4 cut(s)	216, 472, 480, 814
BseGI	GGATG	2 cut(s)	68, 619
BseLI	CCNNNNNNNGG	2 cut(s)	22, 815
BseMII	CTCAG	2 cut(s)	771, 800
BseRI	GAGGAG	3 cut(s)	260, 263, 731
BseXI	GCAGC	4 cut(s)	16, 208, 814, 823
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	22, 815
BsmAI	GTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	585, 798
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp19I	CCATGG	2 cut(s)	216, 480
BspACI	CCGC	3 cut(s)	112, 231, 288
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	772, 799
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	331, 478, 820
BspPI	GGATC	2 cut(s)	580, 806
BspT104I	TTCGAA	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	4 cut(s)	216, 472, 480, 814
BssMI	GATC	2 cut(s)	585, 798
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	2 cut(s)	216, 480
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	2 cut(s)	32, 473
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	88, 241, 564, 853
BstDEI	CTNAG	3 cut(s)	154, 780, 786
BstDSI	CCRYGG	3 cut(s)	216, 472, 480
BstF5I	GGATG	2 cut(s)	68, 619
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	588, 801
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	2 cut(s)	585, 798
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 150, 221, 230, 827, 833, 836
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	1 cut(s)	813
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	4 cut(s)	16, 208, 814, 823
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	3 cut(s)	216, 472, 480
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	68, 619
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	73, 184, 507
Cac8I	GCNNGC	4 cut(s)	88, 241, 564, 853
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	142, 330, 381
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	5 cut(s)	119, 217, 481, 563, 610
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	3 cut(s)	154, 780, 786
DpnI	GATC	2 cut(s)	587, 800
DpnII	GATC	2 cut(s)	585, 798
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	216, 480
Eco24I	GRGCYC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	330, 381
Eco53kI	GAGCTC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	216, 480
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	216, 480
FaeI	CATG	5 cut(s)	122, 220, 484, 566, 613
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	118, 216, 480, 562, 609
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	5, 113, 222, 828, 837
FokI	GGATG	2 cut(s)	75, 626
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	5, 113, 222, 828, 837
FspBI	CTAG	2 cut(s)	342, 738
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	5 cut(s)	5, 113, 222, 828, 837
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	822
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	5 cut(s)	122, 220, 484, 566, 613
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	4 cut(s)	205, 515, 544, 770
HpaII	CCGG	1 cut(s)	822
Hpy166II	GTNNAC	2 cut(s)	28, 580
Hpy188I	TCNGA	4 cut(s)	325, 571, 708, 789
Hpy188III	TCNNGA	4 cut(s)	60, 373, 437, 796
Hpy8I	GTNNAC	2 cut(s)	28, 580
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	317, 769
HpyCH4III	ACNGT	2 cut(s)	32, 473
HpyCH4IV	ACGT	2 cut(s)	75, 97
HpyCH4V	TGCA	5 cut(s)	4, 66, 224, 415, 695
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 150, 221, 230, 827, 833, 836
HpyF3I	CTNAG	3 cut(s)	154, 780, 786
HpySE526I	ACGT	2 cut(s)	75, 97
Hsp92II	CATG	5 cut(s)	122, 220, 484, 566, 613
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	585, 798
LmnI	GCTCC	3 cut(s)	273, 476, 818
LpnPI	CCDG	9 cut(s)	78, 100, 247, 417, 781, 800, 822, 827, 835
Lsp1109I	GCAGC	4 cut(s)	16, 208, 814, 823
LweI	GCATC	2 cut(s)	53, 681
MaeI	CTAG	2 cut(s)	342, 738
MaeII	ACGT	2 cut(s)	75, 97
MaeIII	GTNAC	4 cut(s)	68, 505, 548, 596
MalI	GATC	2 cut(s)	587, 800
MboI	GATC	2 cut(s)	585, 798
MboII	GAAGA	2 cut(s)	139, 715
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	6 cut(s)	405, 410, 417, 453, 538, 677
MlyI	GAGTC	2 cut(s)	524, 764
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	7 cut(s)	46, 269, 281, 284, 709, 712, 795
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	3 cut(s)	408, 525, 865
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	7 cut(s)	87, 150, 221, 230, 827, 833, 836
NcoI	CCATGG	2 cut(s)	216, 480
NdeII	GATC	2 cut(s)	585, 798
NlaIII	CATG	5 cut(s)	122, 220, 484, 566, 613
NlaIV	GGNNCC	3 cut(s)	331, 478, 820
NmuCI	GTSAC	2 cut(s)	68, 505
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	448
PaeI	GCATGC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	205, 544
PflFI	GACNNNGTC	1 cut(s)	575
PkrI	GCNGC	5 cut(s)	6, 114, 223, 829, 838
PleI	GAGTC	2 cut(s)	523, 764
PpsI	GAGTC	2 cut(s)	523, 764
PpuMI	RGGWCCY	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	3 cut(s)	331, 478, 820
PspPI	GGNCC	3 cut(s)	142, 330, 381
PspPPI	RGGWCCY	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	585
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	408, 525, 865
SatI	GCNGC	5 cut(s)	5, 113, 222, 828, 837
Sau3AI	GATC	2 cut(s)	585, 798
Sau96I	GGNCC	3 cut(s)	142, 330, 381
SchI	GAGTC	2 cut(s)	524, 764
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	53, 681
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	2 cut(s)	330, 381
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
SpeI	ACTAGT	1 cut(s)	341
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	6 cut(s)	405, 410, 417, 453, 538, 677
SsiI	CCGC	3 cut(s)	112, 231, 288
SspMI	CTAG	2 cut(s)	342, 738
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	2 cut(s)	216, 480
TaaI	ACNGT	2 cut(s)	32, 473
TaiI	ACGT	2 cut(s)	78, 100
TaqI	TCGA	2 cut(s)	448, 773
TasI	AATT	6 cut(s)	405, 410, 417, 453, 538, 677
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	205, 544
Tru1I	TTAA	3 cut(s)	408, 525, 865
Tru9I	TTAA	3 cut(s)	408, 525, 865
TscAI	CASTG	3 cut(s)	73, 184, 514
TseFI	GTSAC	2 cut(s)	68, 505
TseI	GCWGC	4 cut(s)	4, 221, 827, 836
Tsp45I	GTSAC	2 cut(s)	68, 505
TspDTI	ATGAA	2 cut(s)	630, 678
TspRI	CASTG	3 cut(s)	73, 184, 514
Tth111I	GACNNNGTC	1 cut(s)	575
VpaK11BI	GGWCC	2 cut(s)	330, 381
XapI	RAATTY	2 cut(s)	417, 677
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	2 cut(s)	342, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.