Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002726

Physical Location & Seq

Genomic Coordinates Forward (+)

55256885 .. 55257784

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG327500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTATTTTGTTGGTGTATGATGTAACTGATGAGTCATCTTTCAACAACATTAGGAACTGGATTCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGGTTCTGGTGGGAAACAAGGCTGATATGGATGAAAGCAAAAGGGCCGTGCCTGCATCTAAAGGTCAAGCTCTTGCTGATGAGTATGGCATCAAGTTCTTTGAAACTAGTGCAAAGACAAACTTGAATGTGGAGGAGGTTTTCTTTTCAATAGCCAGGGATATCAAGCAGAGACTTGCAGAATCTGATGCCAGGGGCACTGAGCCGCAAGCACTCAAGATGAATGAAGTAGGCAATGGAGGCGGTCAAGCAGTGCAAAAATCATCATGCTGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

126

Amino Acids

13.8

Weight (kDa)

5.18

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 90	1.3e-30	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46060 AT3G46060 AT3G46060 AT3G53610 AT3G53610 AT3G53610 AT5G59840
fragaria_vesca	FvH4_6g14360 FvH4_6g14360 FvH4_7g21670 FvH4_7g21670 FvH4_7g21670
malus_domestica	MD04G1120500.v1.1 MD12G1137800.v1.1
prunus_persica	Prupe.2G230200_v2.0.a1 Prupe.2G230200_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1 Prupe.6G249800_v2.0.a1
pyrus_communis	pycom01g14960 pycom04g10960 pycom07g18160 pycom12g13170
rosa_chinensis	RchiOBHm_Chr1g0365911 RchiOBHm_Chr3g0467421
rosa_multiflora	Rmu_sc0012351.1_g000013
rosa_roxburghii	Rroxscaffold_4G00290740 Rroxscaffold_6G00413690
rosa_rugosa	Rorug01G0325500 Rorug01G0325600 Rorug03G0086800
rosa_samantha	Rh1AG334400 Rh1CG311800 Rh1DG327500 Rh3BG156900 Rh3CG156800 Rh3DG157700
rosa_wichuraiana	Rw1G029680 Rw3G012840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	308, 345
AgsI	TTSAA	5 cut(s)	46, 77, 206, 229, 252
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	257, 293
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	259, 295
BcoDI	GTCTC	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	2 cut(s)	259, 295
BmgT120I	GGNCC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	259, 295
BmsI	GCATC	3 cut(s)	167, 201, 280
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	258, 294
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	259, 295
BseDI	CCNNGG	2 cut(s)	258, 294
BseGI	GGATG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	308, 345
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	258, 294
Bst2UI	CCWGG	2 cut(s)	259, 295
BstC8I	GCNNGC	2 cut(s)	156, 312
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 342
BstNI	CCWGG	2 cut(s)	259, 295
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	257, 293
BstSLI	GKGCMC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	300, 360
Cac8I	GCNNGC	2 cut(s)	156, 312
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	147
CviAII	CATG	2 cut(s)	83, 369
CviJI	RGCY	5 cut(s)	125, 149, 173, 257, 307
CviKI_1	RGCY	5 cut(s)	125, 149, 173, 257, 307
DdeI	CTNAG	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	257, 293
EcoRV	GATATC	1 cut(s)	265
FaeI	CATG	2 cut(s)	86, 372
FaiI	YATR	5 cut(s)	21, 84, 131, 189, 370
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	82, 368
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	86, 372
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	35, 64, 284
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	91, 289
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	158, 215, 281, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 342
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	86, 372
LpnPI	CCDG	7 cut(s)	46, 95, 168, 244, 271, 280, 307
LweI	GCATC	3 cut(s)	167, 201, 280
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	25, 68
MhlI	GDGCHC	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	229, 232, 335
MspR9I	CCNGG	2 cut(s)	259, 295
MvaI	CCWGG	2 cut(s)	259, 295
MwoI	GCNNNNNNNGC	2 cut(s)	155, 342
NlaIII	CATG	2 cut(s)	86, 372
NspI	RCATGY	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	64, 284
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	257, 293
PspGI	CCWGG	2 cut(s)	257, 293
PspPI	GGNCC	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	95
SatI	GCNGC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	259, 295
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	4 cut(s)	108, 169, 175, 243
SfaNI	GCATC	3 cut(s)	167, 201, 280
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	308, 345
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	257, 293
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	2 cut(s)	64, 284
TscAI	CASTG	2 cut(s)	307, 360
TspDTI	ATGAA	3 cut(s)	150, 338, 342
TspRI	CASTG	2 cut(s)	307, 360
Tth111I	GACNNNGTC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.