Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

16945230 .. 16946699

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAAATGATGCAAGAGGAGGGAAACCGAAAAGGTCCATGGACAGAACAGGAAGACATACTTCTGGTAAATTTTGTTCACTTATTTGGAGATCGACGATGGGATTTTATAGCAAAAGTATCAGGTTTGAACAGAACAGGAAAGAGTTGCAGGCTAAGATGGGTTAATTACCTACATCCTGGTCTCAAACGTGGCAAGATGACGCCTCAAGAAGAGCGCCTCGTCCTTGAGCTTCACGCTAAGTGGGGAAACAGGTGGTCGAAAATAGCCCGAAAATTGCCGGGACGAACGGATAACGAGATAAAGAACTACTGGAGGACTCATATGAGGAAGAAAGCTCAAGAAAAGAAGCGTCCTGTTTCCCCAACTTCCTCATTTTCCAACTGCAGCTCGTCATCTGTGACCACTACCACCACCAATACTCAAGATACATCGTGCCACTCGCGTAAATCTTCAGGGGAAGTGAGCTTTTACGACACTGGAGGTTCCCGATCCACTAGAGAGATGAATCAAGAAAACGAAGACGTGTACTCGTTGGATGATATATGGAGAGAGATTGATCACTCAGCAGTAAACATAATAAAACCGGTTAAAGACATCTACTCAGAACAAAGCCATTGCTTAAGTTACCCAAATCTAGCTTCACCATCATGGGAAAGCTCATTGGATTCTATATGGAACATGGATGCAGATAAAAGTAAGATATCGTCTTACTTTGCAAATGATCAGTTTCCTTTCTGTTTCCAACACAGTAGATCACCATGGTCGTCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

258

Amino Acids

29.91

Weight (kDa)

9.13

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 42	1.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 49	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	445
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	530
AflII	CTTAAG	1 cut(s)	622
AflIII	ACRYGT	1 cut(s)	525
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	625, 657
AluBI	AGCT	6 cut(s)	232, 338, 390, 468, 641, 660
AluI	AGCT	6 cut(s)	232, 338, 390, 468, 641, 660
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	486
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	70
AsiGI	ACCGGT	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	636, 750
AvaII	GGWCC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	60, 528
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	93, 153, 655
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	2 cut(s)	559, 724
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	498, 638
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	220
BfrI	CTTAAG	1 cut(s)	622
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	2 cut(s)	180, 282
Bme18I	GGWCC	1 cut(s)	35
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	2 cut(s)	180, 282
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	2 cut(s)	60, 528
BpmI	CTGGAG	2 cut(s)	334, 501
BpuEI	CTTGAG	4 cut(s)	192, 248, 324, 408
BpuMI	CCSGG	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	38, 761
BsaWI	WCCGGW	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	317, 484
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	38, 761
BseGI	GGATG	3 cut(s)	175, 544, 691
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	579, 618
BseNI	ACTGG	2 cut(s)	317, 484
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	445
BshTI	ACCGGT	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	281, 587
BslFI	GGGAC	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	91, 491, 559, 724, 755
Bsp19I	CCATGG	2 cut(s)	38, 761
BspCNI	CTCAG	2 cut(s)	578, 617
BspFNI	CGCG	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	389
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	207
BspTI	CTTAAG	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	317, 484
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	38, 761
BssMI	GATC	5 cut(s)	91, 491, 559, 724, 755
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	38, 761
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	752
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	4 cut(s)	155, 240, 565, 604
BstDSI	CCRYGG	2 cut(s)	38, 761
BstF5I	GGATG	3 cut(s)	175, 544, 691
BstFNI	CGCG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	5 cut(s)	94, 494, 562, 727, 758
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	5 cut(s)	91, 491, 559, 724, 755
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	178, 280
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	399
BstV2I	GAAGAC	2 cut(s)	60, 528
BtgI	CCRYGG	2 cut(s)	38, 761
BtrI	CACGTC	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	175, 544, 691
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	2 cut(s)	211, 341
Csp6I	GTAC	1 cut(s)	529
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	4 cut(s)	39, 651, 682, 762
CviJI	RGCY	9 cut(s)	154, 232, 269, 338, 390, 468, 615, 641, 660
CviKI_1	RGCY	9 cut(s)	154, 232, 269, 338, 390, 468, 615, 641, 660
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	155, 240, 565, 604
DpnI	GATC	5 cut(s)	93, 493, 561, 726, 757
DpnII	GATC	5 cut(s)	91, 491, 559, 724, 755
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	38, 761
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	705
EcoT14I	CCWWGG	2 cut(s)	38, 761
ErhI	CCWWGG	2 cut(s)	38, 761
FaeI	CATG	4 cut(s)	42, 654, 685, 765
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	4 cut(s)	38, 650, 681, 761
FauNDI	CATATG	1 cut(s)	324
FbaI	TGATCA	2 cut(s)	559, 724
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	3 cut(s)	162, 551, 698
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	498, 638
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	2 cut(s)	334, 501
HaeII	RGCGCY	1 cut(s)	220
HapII	CCGG	2 cut(s)	281, 587
HgaI	GACGC	2 cut(s)	211, 341
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	42, 654, 685, 765
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	319, 508, 668
HpaII	CCGG	2 cut(s)	281, 587
HphI	GGTGA	2 cut(s)	636, 750
Hpy166II	GTNNAC	3 cut(s)	79, 529, 574
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	5 cut(s)	209, 341, 425, 489, 512
Hpy8I	GTNNAC	3 cut(s)	79, 529, 574
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4IV	ACGT	2 cut(s)	190, 525
HpyCH4V	TGCA	5 cut(s)	13, 150, 387, 689, 719
HpyF3I	CTNAG	4 cut(s)	155, 240, 565, 604
HpySE526I	ACGT	2 cut(s)	190, 525
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	42, 654, 685, 765
HspAI	GCGC	1 cut(s)	217
Ksp22I	TGATCA	2 cut(s)	559, 724
Kzo9I	GATC	5 cut(s)	91, 491, 559, 724, 755
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	2 cut(s)	498, 638
MaeII	ACGT	2 cut(s)	190, 525
MaeIII	GTNAC	2 cut(s)	400, 626
MalI	GATC	5 cut(s)	93, 493, 561, 726, 757
MboI	GATC	5 cut(s)	91, 491, 559, 724, 755
MboII	GAAGA	5 cut(s)	65, 224, 343, 444, 533
MluCI	AATT	3 cut(s)	70, 166, 275
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	3 cut(s)	405, 516, 769
MnlI	CCTC	8 cut(s)	10, 13, 216, 230, 309, 321, 382, 476
MseI	TTAA	4 cut(s)	165, 591, 623, 775
MslI	CAYNNNNRTG	1 cut(s)	649
MspCI	CTTAAG	1 cut(s)	622
MspI	CCGG	2 cut(s)	281, 587
MspR9I	CCNGG	2 cut(s)	180, 282
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	445
NciI	CCSGG	1 cut(s)	282
NcoI	CCATGG	2 cut(s)	38, 761
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	5 cut(s)	91, 491, 559, 724, 755
NlaIII	CATG	4 cut(s)	42, 654, 685, 765
NlaIV	GGNNCC	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	508, 668
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	35
PsrI	GAACNNNNNNTAC	2 cut(s)	60, 92
PstI	CTGCAG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	165, 591, 623, 775
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	5 cut(s)	91, 491, 559, 724, 755
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	180, 282
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	649
SmlI	CTYRAG	5 cut(s)	207, 227, 339, 423, 622
SmoI	CTYRAG	5 cut(s)	207, 227, 339, 423, 622
Sse9I	AATT	3 cut(s)	70, 166, 275
SspMI	CTAG	2 cut(s)	498, 638
StyD4I	CCNGG	2 cut(s)	178, 280
StyI	CCWWGG	2 cut(s)	38, 761
TaaI	ACNGT	1 cut(s)	752
TaiI	ACGT	2 cut(s)	193, 528
TaqI	TCGA	2 cut(s)	94, 260
TasI	AATT	3 cut(s)	70, 166, 275
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	2 cut(s)	508, 668
Tru1I	TTAA	4 cut(s)	165, 591, 623, 775
Tru9I	TTAA	4 cut(s)	165, 591, 623, 775
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	17, 521
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	2 cut(s)	498, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.