Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

10312847 .. 10313337

Gene Structure 491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1114000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGAAAATGGTGCAAGATCAAGAACAGATCAGAAAGGGGCCATGGACTGAGCAAGAGGACTTCCAGTTGGTGTGCTTTGTGGGCCTGTTTGGAGACAGGCGATGGGATTTCATAGCCAAAGTTTCAGGTTTGAAGGTGGAGGGAGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

51

Amino Acids

5.89

Weight (kDa)

5.17

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 43	6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	87, 138
AoxI	GGCC	2 cut(s)	38, 82
AspS9I	GGNCC	2 cut(s)	38, 82
BccI	CCATC	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	87, 138
BmgT120I	GGNCC	2 cut(s)	38, 82
BmiI	GGNNCC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	40, 84
BsmAI	GTCTC	2 cut(s)	87, 138
BsnI	GGCC	2 cut(s)	40, 84
Bsp143I	GATC	2 cut(s)	16, 27
Bsp19I	CCATGG	1 cut(s)	41
BspANI	GGCC	2 cut(s)	40, 84
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	16, 27
BssT1I	CCWWGG	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	41
BstKTI	GATC	2 cut(s)	19, 30
BstMAI	GTCTC	2 cut(s)	87, 138
BstMBI	GATC	2 cut(s)	16, 27
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	40, 84
BtgI	CCRYGG	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	38, 82
CviAII	CATG	1 cut(s)	42
CviJI	RGCY	3 cut(s)	40, 84, 116
CviKI_1	RGCY	3 cut(s)	40, 84, 116
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	18, 29
DpnII	GATC	2 cut(s)	16, 27
Eco130I	CCWWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	45
FaiI	YATR	2 cut(s)	43, 113
FatI	CATG	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	40, 84
Hin1II	CATG	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	16, 27
LpnPI	CCDG	4 cut(s)	77, 82, 98, 111
MalI	GATC	2 cut(s)	18, 29
MboI	GATC	2 cut(s)	16, 27
MnlI	CCTC	2 cut(s)	49, 133
MwoI	GCNNNNNNNGC	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	16, 27
NlaIII	CATG	1 cut(s)	45
NlaIV	GGNNCC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	38, 82
Sau3AI	GATC	2 cut(s)	16, 27
Sau96I	GGNCC	2 cut(s)	38, 82
SetI	ASST	2 cut(s)	130, 138
SgeI	CNNG	8 cut(s)	26, 32, 54, 65, 76, 97, 109, 138
StyI	CCWWGG	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.