Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Forward (+)

10313339 .. 10314694

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1114100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGGTTTTGTTACTTGTAGGTTTGAACAGAACAGGTAAGAGTTGCAGGTTAAGATGGGTTAACTACTTGCACCCTGACCTCAAAAGAGGAAAGATGACTCCTCAAGAAGAGCGCCTAGTTCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCCAGAATTGCTAGAAAATTACCTGGGAGGACAGACAATGAGATCAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCACAAGAGAAAAAGAGGGCCATGTCTCCCTCATCATCTTCTTCCAATTGTTCCTCCTCATCAAACATCACCACAACTGAAGGAGGAGAAAGCTTTTATGACACCGGGGGAAAGAAACCCAAGGCTTCATCAGGAGGAAAGAAAACTGGAGGAGGAGACGAAGTGAAAGAAGACGAGAAAAGGGAGCAAAGGGAGTACTCACTCGATGATATATGGAAGGACATCAATCTGCCAGAAGTGAGCAGTATTGTACCAGTTTATGATGGCAACCTTTCTTCTTGTCCTCTAATGGCTTCTCCGACGCCATGGGAATACTTTTCCGACTCGCTTTGGAAAATGGATTTAGAAGAAGAGAGTAAGAATATGTTTCTTCCTACACCAAGTGGTGATCACCAATTTCTGTCATGCTATGAATATGGAAAAGCATCTCTAACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.44

Weight (kDa)

8.91

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 74	2.8e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	34 - 81	5.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	536
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	431, 486
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	130, 327
AluI	AGCT	2 cut(s)	130, 327
Alw26I	GTCTC	2 cut(s)	264, 384
AoxI	GGCC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	156, 252
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	295, 617, 632
AvaII	GGWCC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	411
BccI	CCATC	3 cut(s)	51, 147, 491
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	2 cut(s)	264, 384
BfaI	CTAG	2 cut(s)	119, 168
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	180, 340
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	156, 252
BmrFI	CCNGG	2 cut(s)	180, 340
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	2 cut(s)	232, 402
BpuEI	CTTGAG	2 cut(s)	90, 146
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	4 cut(s)	179, 339, 354, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bse1I	ACTGG	4 cut(s)	215, 385, 488, 673
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	179, 339, 354, 539
BseNI	ACTGG	4 cut(s)	215, 385, 488, 673
BseRI	GAGGAG	5 cut(s)	93, 280, 333, 399, 402
BshFI	GGCC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	264, 384
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	198, 622
Bsp19I	CCATGG	1 cut(s)	539
BspANI	GGCC	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	215, 385, 488, 673
BssECI	CCNNGG	4 cut(s)	179, 339, 354, 539
BssMI	GATC	2 cut(s)	198, 622
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	354, 539
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	2 cut(s)	105, 579
BstACI	GRCGYC	1 cut(s)	536
BstDSI	CCRYGG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	201, 625
BstMAI	GTCTC	2 cut(s)	264, 384
BstMBI	GATC	2 cut(s)	198, 622
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	178, 338
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	254
BtgI	CCRYGG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	156, 252
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	430, 485
CviAII	CATG	3 cut(s)	256, 540, 639
CviJI	RGCY	6 cut(s)	130, 254, 327, 359, 527, 672
CviKI_1	RGCY	6 cut(s)	130, 254, 327, 359, 527, 672
CviQI	GTAC	2 cut(s)	430, 485
DpnI	GATC	2 cut(s)	200, 624
DpnII	GATC	2 cut(s)	198, 622
DraIII	CACNNNGTG	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	105, 579
EarI	CTCTTC	2 cut(s)	105, 579
Eco130I	CCWWGG	2 cut(s)	354, 539
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	354, 539
ErhI	CCWWGG	2 cut(s)	354, 539
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	3 cut(s)	259, 543, 642
FatI	CATG	3 cut(s)	255, 539, 638
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	622
FspBI	CTAG	2 cut(s)	119, 168
GlaI	GCGC	1 cut(s)	116
GsuI	CTGGAG	2 cut(s)	232, 402
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	259, 543, 642
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	3 cut(s)	100, 217, 557
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	3 cut(s)	295, 617, 632
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	534, 556
Hpy188III	TCNNGA	5 cut(s)	107, 125, 159, 202, 366
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	3 cut(s)	226, 308, 445
HpyCH4V	TGCA	2 cut(s)	48, 73
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	3 cut(s)	259, 543, 642
HspAI	GCGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	198, 622
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	418
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	2 cut(s)	119, 168
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	200, 624
MboI	GATC	2 cut(s)	198, 622
MboII	GAAGA	9 cut(s)	122, 241, 264, 267, 416, 501, 593, 596, 596
MfeI	CAATTG	1 cut(s)	280
MluCI	AATT	4 cut(s)	162, 173, 280, 629
MlyI	GAGTC	3 cut(s)	94, 211, 551
MmeI	TCCRAC	2 cut(s)	557, 579
MseI	TTAA	2 cut(s)	53, 63
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	180, 340
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	539
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	2 cut(s)	198, 622
NlaIII	CATG	3 cut(s)	259, 543, 642
PciSI	GCTCTTC	1 cut(s)	105
PleI	GAGTC	3 cut(s)	94, 211, 551
PpsI	GAGTC	3 cut(s)	94, 211, 551
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	156, 252
RsaI	GTAC	2 cut(s)	431, 486
RsaNI	GTAC	2 cut(s)	430, 485
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	53, 63
Sau3AI	GATC	2 cut(s)	198, 622
Sau96I	GGNCC	2 cut(s)	156, 252
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	3 cut(s)	94, 211, 551
ScrFI	CCNGG	2 cut(s)	180, 340
SetI	ASST	8 cut(s)	25, 40, 53, 84, 132, 181, 329, 507
SfaNI	GCATC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	105, 125
SmoI	CTYRAG	2 cut(s)	105, 125
Sse9I	AATT	4 cut(s)	162, 173, 280, 629
SspMI	CTAG	2 cut(s)	119, 168
StyD4I	CCNGG	2 cut(s)	178, 338
StyI	CCWWGG	2 cut(s)	354, 539
TaqI	TCGA	1 cut(s)	438
TasI	AATT	4 cut(s)	162, 173, 280, 629
TatI	WGTACW	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	53, 63
Tru9I	TTAA	2 cut(s)	53, 63
TspDTI	ATGAA	2 cut(s)	351, 660
VpaK11BI	GGWCC	1 cut(s)	156
XspI	CTAG	2 cut(s)	119, 168
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.