Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Reverse (-)

70688606 .. 70689739

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG441100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACCCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAGTTACCAGGGAGGACTGATAATGAGATTAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGAGGGCTGTGTCACCATCATCATCATCTTCCAACTGTTCGTCATCATCAAACATCACCACCAATGAAGGAGGAGCAAGCTTTTATGACACCGGTGGGGCTGAAATCGTGGCTTCCTCAGCAGAGAAGAAAAATATCAACAGTGGAGATCAAGAGAAAGAAGATGGTAATGACACTACTAAAAGGGACCAAAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATTTGCCAGAAGTGAACAGTATTGAACCAGTTTATGATGGCAGCTATGGTGAAGAAGTCTGCAAATTTTCATGCCCTTTAATGGCTACTCCTCCTCCACTGTCATGGGATTCACTGTTTAAAATAGATGAAGATCAAGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGAAAGGCATCGTCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

202

Amino Acids

22.75

Weight (kDa)

5.12

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 42	5.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 49	2.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	404, 578
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	34, 231, 423
AluI	AGCT	3 cut(s)	34, 231, 423
Alw26I	GTCTC	1 cut(s)	600
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	443
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	156, 199, 440
AvaII	GGWCC	1 cut(s)	337
BbvCI	CCTCAGC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	4 cut(s)	51, 175, 308, 410
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu10I	CCTNAGC	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	50, 126
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	407, 607
Bse8I	GATNNNNATC	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	83
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	407, 607
BseRI	GAGGAG	3 cut(s)	237, 459, 462
BseXI	GCAGC	1 cut(s)	432
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	600
BsmBI	CGTCTC	1 cut(s)	600
BsmFI	GGGAC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	298, 511
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	338
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	407, 607
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	298, 511
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	5 cut(s)	188, 293, 398, 480, 495
Bst6I	CTCTTC	2 cut(s)	9, 146
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	301, 514
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	298, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 269
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	483
BtsIMutI	CAGTG	3 cut(s)	298, 476, 491
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	2 cut(s)	450, 483
CviJI	RGCY	9 cut(s)	34, 140, 158, 231, 251, 263, 423, 464, 606
CviKI_1	RGCY	9 cut(s)	34, 140, 158, 231, 251, 263, 423, 464, 606
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	2 cut(s)	300, 513
DpnII	GATC	2 cut(s)	298, 511
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	9, 146
EarI	CTCTTC	2 cut(s)	9, 146
Eco47I	GGWCC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	600
FaeI	CATG	2 cut(s)	453, 486
FalI	AAGNNNNNCTT	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	449, 482
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	421
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	453, 486
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	2 cut(s)	121, 488
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	156, 199, 440
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188III	TCNNGA	5 cut(s)	11, 63, 143, 302, 515
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	130, 212
HpyCH4III	ACNGT	5 cut(s)	188, 293, 398, 480, 495
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 269
HpyF3I	CTNAG	1 cut(s)	268
Hsp92II	CATG	2 cut(s)	453, 486
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	298, 511
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	8 cut(s)	69, 96, 256, 399, 420, 578, 583, 588
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	78, 162, 551
MalI	GATC	2 cut(s)	300, 513
MboI	GATC	2 cut(s)	298, 511
MboII	GAAGA	9 cut(s)	26, 145, 160, 163, 171, 289, 323, 443, 521
MluCI	AATT	5 cut(s)	66, 109, 379, 443, 560
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	18, 81, 111, 123, 147, 215, 277, 480, 483
MseI	TTAA	3 cut(s)	105, 458, 498
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	25, 269
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	298, 511
NlaIII	CATG	2 cut(s)	453, 486
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	162, 551
PciSI	GCTCTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	488
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	481
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	105, 458, 498
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	298, 511
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	3 cut(s)	36, 233, 425
SfaNI	GCATC	1 cut(s)	599
SgrAI	CRCCGGYG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	3 cut(s)	9, 29, 141
SmoI	CTYRAG	3 cut(s)	9, 29, 141
Sse9I	AATT	5 cut(s)	66, 109, 379, 443, 560
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	5 cut(s)	188, 293, 398, 480, 495
TasI	AATT	5 cut(s)	66, 109, 379, 443, 560
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	105, 458, 498
Tru9I	TTAA	3 cut(s)	105, 458, 498
TscAI	CASTG	3 cut(s)	298, 483, 498
TseFI	GTSAC	2 cut(s)	162, 551
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	2 cut(s)	162, 551
TspDTI	ATGAA	3 cut(s)	231, 438, 522
TspRI	CASTG	3 cut(s)	298, 483, 498
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	443
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.