Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Reverse (-)

71348883 .. 71350253

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGATTTCATAGCCAAAGTTTCAGGTTTGAAGGTGGCGGGAGACAAATAATAGGTTTGAACAGAACCGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGAGCCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAGTTACCAGGGAGGACTGATAATGAGATTAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGAGGGCAGTGTCACCATCATCATCATCTTCCAACTGTTCATCATCATCAAACATCACCACCAATGAAGGAGGAGCAAGCTTTTATGACACCGGTGGGGCTGAAATCGTGGCTTCATCAGCAGAGAAGAAAAATATCAACAGTGGAGATCAAGAGAAAGAAGATGGTAATGACACTACTAAAAGGGACCAAAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATTTGCCAGAAGTGAACAGTATTGAACCAGTTTATGATGGCAGCTATGGTGAAGAAGTCTGCAAATTTTCATGCCCTTTAATGGCTACTCCTCCTCCACTGTCATGGGATTCACTGTTTAAAATAGATGAAGATCAAGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGAAAGGCATCGTCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.67

Weight (kDa)

8.2

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 85	7.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	45 - 92	1.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgeI	ACCGGT	2 cut(s)	68, 371
AgsI	TTSAA	4 cut(s)	32, 61, 533, 707
AjnI	CCWGG	2 cut(s)	109, 211
AluBI	AGCT	3 cut(s)	163, 360, 552
AluI	AGCT	3 cut(s)	163, 360, 552
Alw26I	GTCTC	2 cut(s)	37, 729
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	572
AsiGI	ACCGGT	2 cut(s)	68, 371
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	285, 328, 569
AvaII	GGWCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	4 cut(s)	180, 304, 437, 539
BciT130I	CCWGG	2 cut(s)	111, 213
BcoDI	GTCTC	2 cut(s)	37, 729
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	111, 213
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	111, 213
BmsI	GCATC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	3 cut(s)	123, 179, 255
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	109, 212
BsaWI	WCCGGW	2 cut(s)	68, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse118I	RCCGGY	2 cut(s)	68, 371
Bse1I	ACTGG	2 cut(s)	536, 736
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	111, 213
BseDI	CCNNGG	2 cut(s)	109, 212
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseNI	ACTGG	2 cut(s)	536, 736
BseRI	GAGGAG	3 cut(s)	366, 588, 591
BseXI	GCAGC	1 cut(s)	561
BshFI	GGCC	1 cut(s)	114
BshTI	ACCGGT	2 cut(s)	68, 371
BsiSI	CCGG	2 cut(s)	69, 372
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	2 cut(s)	37, 729
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	427, 640
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	68, 371
BsrI	ACTGG	2 cut(s)	536, 736
BssAI	RCCGGY	2 cut(s)	68, 371
BssECI	CCNNGG	2 cut(s)	109, 212
BssMI	GATC	2 cut(s)	427, 640
Bst2UI	CCWGG	2 cut(s)	111, 213
Bst4CI	ACNGT	5 cut(s)	317, 422, 527, 609, 624
Bst6I	CTCTTC	2 cut(s)	138, 275
BstC8I	GCNNGC	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	430, 643
BstMAI	GTCTC	2 cut(s)	37, 729
BstMBI	GATC	2 cut(s)	427, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 154, 398
BstNI	CCWGG	2 cut(s)	111, 213
BstSCI	CCNGG	2 cut(s)	109, 211
BstV1I	GCAGC	1 cut(s)	561
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	4 cut(s)	294, 427, 605, 620
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	2 cut(s)	68, 371
Cfr13I	GGNCC	1 cut(s)	466
CspAI	ACCGGT	2 cut(s)	68, 371
CviAII	CATG	2 cut(s)	579, 612
DpnI	GATC	2 cut(s)	429, 642
DpnII	GATC	2 cut(s)	427, 640
DraI	TTTAAA	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	138, 275
EarI	CTCTTC	2 cut(s)	138, 275
Eco24I	GRGCYC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	109, 211
EcoT38I	GRGCYC	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	2 cut(s)	582, 615
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	578, 611
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	550
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	69, 372
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	582, 615
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	250, 617
HpaII	CCGG	2 cut(s)	69, 372
HphI	GGTGA	3 cut(s)	285, 328, 569
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188III	TCNNGA	5 cut(s)	140, 192, 272, 431, 644
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	3 cut(s)	26, 259, 341
HpyCH4III	ACNGT	5 cut(s)	317, 422, 527, 609, 624
HpyCH4V	TGCA	3 cut(s)	81, 106, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 154, 398
Hsp92II	CATG	2 cut(s)	582, 615
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	427, 640
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	207, 291, 680
MalI	GATC	2 cut(s)	429, 642
MboI	GATC	2 cut(s)	427, 640
MboII	GAAGA	9 cut(s)	155, 274, 289, 292, 300, 418, 452, 572, 650
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	5 cut(s)	86, 96, 234, 587, 627
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	2 cut(s)	69, 372
MspR9I	CCNGG	2 cut(s)	111, 213
MvaI	CCWGG	2 cut(s)	111, 213
MwoI	GCNNNNNNNGC	3 cut(s)	132, 154, 398
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	427, 640
NlaIII	CATG	2 cut(s)	582, 615
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	291, 680
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	617
PinAI	ACCGGT	2 cut(s)	68, 371
PkrI	GCNGC	1 cut(s)	551
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	109, 211
PspGI	CCWGG	2 cut(s)	109, 211
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	86, 96, 234, 587, 627
SatI	GCNGC	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	427, 640
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	111, 213
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	8 cut(s)	29, 37, 58, 86, 92, 165, 362, 554
SfaNI	GCATC	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	3 cut(s)	138, 158, 270
SmoI	CTYRAG	3 cut(s)	138, 158, 270
Sse9I	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	109, 211
TaaI	ACNGT	5 cut(s)	317, 422, 527, 609, 624
TasI	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	5 cut(s)	86, 96, 234, 587, 627
Tru9I	TTAA	5 cut(s)	86, 96, 234, 587, 627
TscAI	CASTG	4 cut(s)	294, 427, 612, 627
TseFI	GTSAC	2 cut(s)	291, 680
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	2 cut(s)	291, 680
TspDTI	ATGAA	5 cut(s)	309, 360, 384, 567, 651
TspRI	CASTG	4 cut(s)	294, 427, 612, 627
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	572
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.