Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Reverse (-)

69030778 .. 69032455

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAAATGGTGCAAGATCAACAGGAAATCAGAAAGGGCCCATGGACTGAACAAGAGGACTTCCAACTCGTGTGCTTTGTGGGCTTGTTTGGAGACCGACGATGGGATTTCATAGCCAAAGTTTCAGGTTTGAACAGAACCGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGACCCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAGTTACCAGGGAGGACTGATAATGAGATTAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGAGGGCTGTGTCACCATCATCATCATCTTCCAACTGTTCATCATCATCAAACATCACCACCAATGAAGGAGGAGCAAGCTTTTATGACACCGGTGGGGTTGAAATCGTGGCTTCATCAGCAGAGAAGAAAAATATCAACAGTGGAGATCAAGAGAAAGAAGATGGTAATGACACTACTAAAAGGGACCAAAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATTTGCCAGAAGTGAACAGTATTGAACCAGTTTATGATGCCAGCTATGGTGAAGAAGTCTGCAAATTTTCATGCCCTTTAATGGCCACTCCTCCACTGTCATGGGATTCACTGTTTAAAATAGATGAAGATCAAGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGAAAGGCATCGTCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

269

Amino Acids

30.63

Weight (kDa)

6.84

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	12 - 59	5.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	15 - 73	1.2e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	65 - 109	3.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 116	6.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	644
AfiI	CCNNNNNNNGG	2 cut(s)	103, 661
AgeI	ACCGGT	2 cut(s)	140, 443
AgsI	TTSAA	4 cut(s)	133, 455, 605, 776
AjnI	CCWGG	2 cut(s)	181, 283
AluBI	AGCT	3 cut(s)	235, 432, 624
AluI	AGCT	3 cut(s)	235, 432, 624
Alw26I	GTCTC	2 cut(s)	87, 798
AoxI	GGCC	3 cut(s)	37, 184, 663
ApaI	GGGCCC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	644
AsiGI	ACCGGT	2 cut(s)	140, 443
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	37, 38, 538
AsuHPI	GGTGA	3 cut(s)	357, 400, 641
AvaII	GGWCC	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	68
BccI	CCATC	4 cut(s)	96, 252, 376, 509
BciT130I	CCWGG	2 cut(s)	183, 285
BcoDI	GTCTC	2 cut(s)	87, 798
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	183, 285
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	3 cut(s)	37, 38, 538
BmiI	GGNNCC	2 cut(s)	39, 539
BmrFI	CCNGG	2 cut(s)	183, 285
BmsI	GCATC	2 cut(s)	607, 797
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuEI	CTTGAG	3 cut(s)	195, 251, 327
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	41, 181, 284
BsaWI	WCCGGW	2 cut(s)	140, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 661
Bse118I	RCCGGY	2 cut(s)	140, 443
Bse1I	ACTGG	2 cut(s)	608, 805
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	183, 285
BseDI	CCNNGG	3 cut(s)	41, 181, 284
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	103, 661
BseNI	ACTGG	2 cut(s)	608, 805
BseRI	GAGGAG	2 cut(s)	438, 660
BseSI	GKGCMC	1 cut(s)	41
BshFI	GGCC	3 cut(s)	39, 186, 665
BshTI	ACCGGT	2 cut(s)	140, 443
BsiSI	CCGG	2 cut(s)	141, 444
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	2 cut(s)	103, 661
BsmAI	GTCTC	2 cut(s)	87, 798
BsmBI	CGTCTC	1 cut(s)	798
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	39, 186, 665
Bso31I	GGTCTC	1 cut(s)	87
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	16, 499, 709
Bsp19I	CCATGG	1 cut(s)	41
BspANI	GGCC	3 cut(s)	39, 186, 665
BspLI	GGNNCC	2 cut(s)	39, 539
BspMI	ACCTGC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	87
BsrFI	RCCGGY	2 cut(s)	140, 443
BsrI	ACTGG	2 cut(s)	608, 805
BssAI	RCCGGY	2 cut(s)	140, 443
BssECI	CCNNGG	3 cut(s)	41, 181, 284
BssMI	GATC	3 cut(s)	16, 499, 709
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	183, 285
Bst4CI	ACNGT	5 cut(s)	389, 494, 599, 678, 693
Bst6I	CTCTTC	2 cut(s)	210, 347
BstC8I	GCNNGC	2 cut(s)	430, 622
BstDSI	CCRYGG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	19, 502, 712
BstMAI	GTCTC	2 cut(s)	87, 798
BstMBI	GATC	3 cut(s)	16, 499, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 226, 470
BstNI	CCWGG	2 cut(s)	183, 285
BstSCI	CCNGG	2 cut(s)	181, 283
BstSLI	GKGCMC	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	39, 186, 665
BtgI	CCRYGG	1 cut(s)	41
BtsIMutI	CAGTG	3 cut(s)	499, 674, 689
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	430, 622
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	2 cut(s)	140, 443
Cfr13I	GGNCC	3 cut(s)	37, 38, 538
CspAI	ACCGGT	2 cut(s)	140, 443
CviAII	CATG	3 cut(s)	42, 651, 681
DpnI	GATC	3 cut(s)	18, 501, 711
DpnII	GATC	3 cut(s)	16, 499, 709
DraI	TTTAAA	1 cut(s)	697
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	210, 347
EarI	CTCTTC	2 cut(s)	210, 347
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	181, 283
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	798
FaeI	CATG	3 cut(s)	45, 654, 684
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	3 cut(s)	41, 650, 680
FauNDI	CATATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	39, 186, 665
HapII	CCGG	2 cut(s)	141, 444
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	45, 654, 684
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	322, 686
HpaII	CCGG	2 cut(s)	141, 444
HphI	GGTGA	3 cut(s)	357, 400, 641
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	32
Hpy188III	TCNNGA	5 cut(s)	212, 264, 344, 503, 713
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	331, 413
HpyCH4III	ACNGT	5 cut(s)	389, 494, 599, 678, 693
HpyCH4V	TGCA	4 cut(s)	13, 153, 178, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 226, 470
Hsp92II	CATG	3 cut(s)	45, 654, 684
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	16, 499, 709
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	425
LweI	GCATC	2 cut(s)	607, 797
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	279, 363, 749
MalI	GATC	3 cut(s)	18, 501, 711
MboI	GATC	3 cut(s)	16, 499, 709
MboII	GAAGA	9 cut(s)	227, 346, 361, 364, 372, 490, 524, 644, 719
MhlI	GDGCHC	1 cut(s)	41
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	6 cut(s)	169, 267, 310, 580, 644, 758
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	88, 408
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	5 cut(s)	158, 168, 306, 659, 696
MslI	CAYNNNNRTG	1 cut(s)	679
Msp20I	TGGCCA	1 cut(s)	665
MspI	CCGG	2 cut(s)	141, 444
MspR9I	CCNGG	2 cut(s)	183, 285
MvaI	CCWGG	2 cut(s)	183, 285
MwoI	GCNNNNNNNGC	3 cut(s)	81, 226, 470
NcoI	CCATGG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	3 cut(s)	16, 499, 709
NlaIII	CATG	3 cut(s)	45, 654, 684
NlaIV	GGNNCC	2 cut(s)	39, 539
NmuCI	GTSAC	2 cut(s)	363, 749
PciSI	GCTCTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	686
PinAI	ACCGGT	2 cut(s)	140, 443
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	181, 283
PspGI	CCWGG	2 cut(s)	181, 283
PspN4I	GGNNCC	2 cut(s)	39, 539
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	3 cut(s)	37, 38, 538
RseI	CAYNNNNRTG	1 cut(s)	679
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	5 cut(s)	158, 168, 306, 659, 696
Sau3AI	GATC	3 cut(s)	16, 499, 709
Sau96I	GGNCC	3 cut(s)	37, 38, 538
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	183, 285
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	130, 158, 164, 237, 434, 626
SfaNI	GCATC	2 cut(s)	607, 797
SgrAI	CRCCGGYG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	3 cut(s)	210, 230, 342
SmoI	CTYRAG	3 cut(s)	210, 230, 342
Sse9I	AATT	6 cut(s)	169, 267, 310, 580, 644, 758
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	181, 283
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	5 cut(s)	389, 494, 599, 678, 693
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	169, 267, 310, 580, 644, 758
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	5 cut(s)	158, 168, 306, 659, 696
Tru9I	TTAA	5 cut(s)	158, 168, 306, 659, 696
TscAI	CASTG	3 cut(s)	499, 681, 696
TseFI	GTSAC	2 cut(s)	363, 749
Tsp45I	GTSAC	2 cut(s)	363, 749
TspDTI	ATGAA	7 cut(s)	17, 100, 381, 432, 456, 639, 720
TspRI	CASTG	3 cut(s)	499, 681, 696
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	644
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.