Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005634

Physical Location & Seq

Genomic Coordinates Reverse (-)

68633073 .. 68635020

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCACTTTTGTGGTGTTTTGTACCATTTTGTGTTTGTAGGTTTGAACAGAACCGGTAAGAGTTGCAGGTTGAGGTGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGACCCCCCAAGAAGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAGTTACCAGGGAGGACTGATAATGAGATTAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGAGGGCTGTGTCACCATCATCATCATCTTCCAACTGTTCATCATCATCAAACATCACCACCAATGAAGGAGGAGCAAGCTTTTATGACACCGGTGGGGCTGAAATCGTGGCTTCATCAGCAGAGAAGAAAAATATCAACAGTGGAGATCAAGAGAAGGAAGATGGTAATGACACTACTAAAAGGGACCAAAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATTTGCCAGAAGTGAACAGTATTGAACCAGTTTATGATGGCAGCTATGGTGAAGAAGTCTGCAAATTTTCATGCCCTTTAATGGCTACTCCTCCTCCACTATCATGGGATTCACTGTTTAAAATAGATGAAGATCAAGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGAAAGGCATCGTCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.22

Weight (kDa)

7.6

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 80	3.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	40 - 87	6.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46130 AT3G46130 AT3G46130 AT3G46130 AT5G59780
fragaria_vesca	FvH4_3g34960 FvH4_3g34960 FvH4_3g34960
malus_domestica	MD03G1099900.v1.1 MD11G1114000.v1.1 MD11G1114100.v1.1
prunus_persica	Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1 Prupe.6G085000_v2.0.a1
pyrus_communis	pycom03g08220
rosa_chinensis	RchiOBHm_Chr5g0062851
rosa_laevigata	RLG00000035584
rosa_multiflora	Rmu_sc0012945.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017790
rosa_rugosa	Rorug05G0352100 Rorug05G0352200 Rorug05G0352300
rosa_samantha	Rh5AG413200 Rh5BG427400 Rh5CG451100 Rh5DG441100
rosa_wichuraiana	Rw5G038820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	557
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgeI	ACCGGT	2 cut(s)	53, 356
AgsI	TTSAA	3 cut(s)	46, 518, 692
AjnI	CCWGG	2 cut(s)	94, 196
AleI	CACNNNNGTG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	148, 345, 537
AluI	AGCT	3 cut(s)	148, 345, 537
Alw26I	GTCTC	1 cut(s)	714
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	1 cut(s)	557
AsiGI	ACCGGT	2 cut(s)	53, 356
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	270, 313, 554
AvaII	GGWCC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	4 cut(s)	165, 289, 422, 524
BciT130I	CCWGG	2 cut(s)	96, 198
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	2 cut(s)	96, 198
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	96, 198
BmsI	GCATC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpuEI	CTTGAG	2 cut(s)	164, 240
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	94, 197
BsaWI	WCCGGW	2 cut(s)	53, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse118I	RCCGGY	2 cut(s)	53, 356
Bse1I	ACTGG	2 cut(s)	521, 721
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	96, 198
BseDI	CCNNGG	2 cut(s)	94, 197
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseNI	ACTGG	2 cut(s)	521, 721
BseRI	GAGGAG	3 cut(s)	351, 573, 576
BseXI	GCAGC	1 cut(s)	546
BshFI	GGCC	1 cut(s)	99
BshTI	ACCGGT	2 cut(s)	53, 356
BsiSI	CCGG	2 cut(s)	54, 357
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	714
BsmBI	CGTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	412, 625
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	53, 356
BsrI	ACTGG	2 cut(s)	521, 721
BssAI	RCCGGY	2 cut(s)	53, 356
BssECI	CCNNGG	2 cut(s)	94, 197
BssMI	GATC	2 cut(s)	412, 625
Bst2UI	CCWGG	2 cut(s)	96, 198
Bst4CI	ACNGT	4 cut(s)	302, 407, 512, 609
Bst6I	CTCTTC	2 cut(s)	123, 260
BstC8I	GCNNGC	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	415, 628
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	2 cut(s)	412, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 383
BstNI	CCWGG	2 cut(s)	96, 198
BstSCI	CCNGG	2 cut(s)	94, 196
BstV1I	GCAGC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	412, 605
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	53, 356
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	22
CspAI	ACCGGT	2 cut(s)	53, 356
CviAII	CATG	2 cut(s)	564, 597
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	414, 627
DpnII	GATC	2 cut(s)	412, 625
DraI	TTTAAA	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	123, 260
EarI	CTCTTC	2 cut(s)	123, 260
Eco47I	GGWCC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	94, 196
Esp3I	CGTCTC	1 cut(s)	714
FaeI	CATG	2 cut(s)	567, 600
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	563, 596
FauNDI	CATATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	535
Fsp4HI	GCNGC	1 cut(s)	535
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	54, 357
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	567, 600
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	2 cut(s)	235, 602
HpaII	CCGG	2 cut(s)	54, 357
HphI	GGTGA	3 cut(s)	270, 313, 554
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188III	TCNNGA	4 cut(s)	177, 257, 416, 629
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	3 cut(s)	244, 326, 415
HpyCH4III	ACNGT	4 cut(s)	302, 407, 512, 609
HpyCH4V	TGCA	4 cut(s)	4, 66, 91, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 383
Hsp92II	CATG	2 cut(s)	567, 600
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	412, 625
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	192, 276, 665
MalI	GATC	2 cut(s)	414, 627
MboI	GATC	2 cut(s)	412, 625
MboII	GAAGA	9 cut(s)	140, 259, 274, 277, 285, 403, 437, 557, 635
MluCI	AATT	6 cut(s)	82, 180, 223, 493, 557, 674
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	4 cut(s)	81, 219, 572, 612
MslI	CAYNNNNRTG	2 cut(s)	9, 595
MspI	CCGG	2 cut(s)	54, 357
MspR9I	CCNGG	2 cut(s)	96, 198
MvaI	CCWGG	2 cut(s)	96, 198
MwoI	GCNNNNNNNGC	2 cut(s)	139, 383
NdeI	CATATG	1 cut(s)	240
NdeII	GATC	2 cut(s)	412, 625
NlaIII	CATG	2 cut(s)	567, 600
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	276, 665
OliI	CACNNNNGTG	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	602
PinAI	ACCGGT	2 cut(s)	53, 356
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	94, 196
PspGI	CCWGG	2 cut(s)	94, 196
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	451
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	2 cut(s)	9, 595
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	81, 219, 572, 612
SatI	GCNGC	1 cut(s)	535
Sau3AI	GATC	2 cut(s)	412, 625
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	96, 198
SetI	ASST	6 cut(s)	43, 71, 77, 150, 347, 539
SfaNI	GCATC	1 cut(s)	713
SgrAI	CRCCGGYG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	2 cut(s)	9, 595
SmlI	CTYRAG	2 cut(s)	143, 255
SmoI	CTYRAG	2 cut(s)	143, 255
Sse9I	AATT	6 cut(s)	82, 180, 223, 493, 557, 674
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	94, 196
TaaI	ACNGT	4 cut(s)	302, 407, 512, 609
TasI	AATT	6 cut(s)	82, 180, 223, 493, 557, 674
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	4 cut(s)	81, 219, 572, 612
Tru9I	TTAA	4 cut(s)	81, 219, 572, 612
TscAI	CASTG	2 cut(s)	412, 612
TseFI	GTSAC	2 cut(s)	276, 665
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	2 cut(s)	276, 665
TspDTI	ATGAA	5 cut(s)	294, 345, 369, 552, 636
TspRI	CASTG	2 cut(s)	412, 612
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	557
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.