Rorug05G0352300
MYB Family

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
43960056 .. 43964974
4919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0352300.1

Sequence Viewer

Length: 690 bp
ATGGCCAAGAAATCGGTACCACAACCACGGCTAACAAAGCTTTCGGTCTACCTTTACATACCTAATATAATTGGGTACATTAGGGTTCTCATGAGCTGTTATGCTTTCGCCATATGCTTCTCCAACAAACGACTTTTCTCCCTTCTCTATTTTGTCAGCTTTGTCTGTGACGGAGTAGATGGTTGGTGTGCTCGCAAATTCAATCAAGTTTCAACATTTGGAGCTGTTTTGGACATGGTAACAGACAGGATAAGCACTGCATGTCTCTTGGTAATTCTTTCACAAGTCTATCGGCCTGGCTTGATTTTCCTCTCGTTGCTTGCCTTAGATATTGGTAGCCACTGGCTGCAGATGTACAGTACTTTCCTGCTTGGCAAGGCTAGTCACAAAGATGTGAAAGATAGCACTAATTGGCTTTTTAAAGCATACTATGAGAATCAGATGTTTATGGCTTACTGTTGTGTGTCATGCGAGGTGCTTTATATCATTCTATTTCTTGTTGCAAAGAACGAAACTGAGAATGTGATTGAAGTTCTAATGGGTCTTGCACACCATATTACACCTCTTTCTGTTCTTGTTGGTTTGTGTTTATTTGGATGGGCAGTCAAACAAGCAATTAATTGTATACAGTTGAAGACAGCAGCAGATGTGTGTGTGCTTCATGATATCAACAAAAAGCAGAGCCCATAA

Protein Analysis

229

Amino Acids

25.85

Weight (kDa)

8.72

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 19 - 154 8.9e-16 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 2 cut(s) 48, 625
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 4 cut(s) 18, 77, 356, 361
AgsI TTSAA 4 cut(s) 202, 213, 530, 634
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 4 cut(s) 40, 96, 159, 224
AluI AGCT 4 cut(s) 40, 96, 159, 224
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 2 cut(s) 3, 293
ApeKI GCWGC 2 cut(s) 346, 641
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 618
Asp718I GGTACC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 333, 653
BccI CCATC 2 cut(s) 173, 591
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 347, 642
BlsI GCNGC 2 cut(s) 348, 643
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 602
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 333, 653
BshFI GGCC 2 cut(s) 5, 295
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 2 cut(s) 5, 295
Bsp1286I GDGCHC 2 cut(s) 193, 686
Bsp1407I TGTACA 1 cut(s) 354
BspANI GGCC 2 cut(s) 5, 295
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 2 cut(s) 90, 661
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 26
BssNAI GTATAC 1 cut(s) 626
Bst1107I GTATAC 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 359, 458, 630
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 193, 321
BstDEI CTNAG 2 cut(s) 325, 516
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 602
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 333, 653
BstV2I GAAGAC 1 cut(s) 641
BstZ17I GTATAC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 5, 295
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 602
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 340
Cac8I GCNNGC 2 cut(s) 193, 321
CciI TCATGA 2 cut(s) 90, 661
Csp6I GTAC 4 cut(s) 17, 76, 355, 360
CviAII CATG 5 cut(s) 91, 235, 261, 468, 662
CviQI GTAC 4 cut(s) 17, 76, 355, 360
DdeI CTNAG 2 cut(s) 325, 516
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 686
FaeI CATG 5 cut(s) 94, 238, 264, 471, 665
FatI CATG 5 cut(s) 90, 234, 260, 467, 661
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 2 cut(s) 48, 625
Fnu4HI GCNGC 2 cut(s) 347, 642
FokI GGATG 1 cut(s) 609
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 2 cut(s) 347, 642
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 347, 642
HaeIII GGCC 2 cut(s) 5, 295
Hin1II CATG 5 cut(s) 94, 238, 264, 471, 665
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 436
Hpy166II GTNNAC 2 cut(s) 49, 626
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 2 cut(s) 91, 662
Hpy8I GTNNAC 2 cut(s) 49, 626
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 359, 458, 630
HpyCH4V TGCA 4 cut(s) 260, 349, 503, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 325, 516
Hsp92II CATG 5 cut(s) 94, 238, 264, 471, 665
KpnI GGTACC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 5 cut(s) 232, 282, 309, 328, 380
Lsp1109I GCAGC 2 cut(s) 333, 653
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 167, 238, 383
MboII GAAGA 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 193, 686
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 69, 197, 273, 409, 615, 619
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 320, 466, 573
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 420, 618
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 113
NlaIII CATG 5 cut(s) 94, 238, 264, 471, 665
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 167, 383
NspI RCATGY 1 cut(s) 264
PagI TCATGA 2 cut(s) 90, 661
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 2 cut(s) 348, 643
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 351
RsaI GTAC 4 cut(s) 18, 77, 356, 361
RsaNI GTAC 4 cut(s) 17, 76, 355, 360
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 420, 618
SatI GCNGC 2 cut(s) 347, 642
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 2 cut(s) 193, 686
SetI ASST 8 cut(s) 42, 54, 64, 98, 161, 226, 477, 565
SfcI CTRYAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 6 cut(s) 69, 197, 273, 409, 615, 619
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 359, 458, 630
TaqII GACCGA 1 cut(s) 34
TasI AATT 6 cut(s) 69, 197, 273, 409, 615, 619
TatI WGTACW 2 cut(s) 354, 359
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 420, 618
Tru9I TTAA 2 cut(s) 420, 618
TscAI CASTG 2 cut(s) 262, 347
TseFI GTSAC 2 cut(s) 167, 383
TseI GCWGC 2 cut(s) 346, 641
Tsp45I GTSAC 2 cut(s) 167, 383
TspDTI ATGAA 1 cut(s) 650
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 262, 347
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 197
XceI RCATGY 1 cut(s) 264
XmiI GTMKAC 2 cut(s) 48, 625
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.