Rh5AG167200

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
18108945 .. 18111392
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG167200.1

Sequence Viewer

Length: 408 bp
ATGATGGGGAGCTTCTTAGCTGGAAGTACTGAGGCCCCTGGGGCTTATGAGAATCAGGTAATGCCTGAGACACGACAGAATGGTCGCCGGATAAAAAAATACCGAGGCATGGGCTCTCTTGAAGCGATGACAAAAGGGAGTGATCAAAGGTATCTGGGAGATACAGCGAAGCTGAAGATTGCACAGGGGGTGGTTGGTGCAGTTGCAGACAAAGGTTCTGTTTTAAAGTTTGTACCGTACACAATGCAAGCAGTGAAACAAGGTTTCCAAGATCTCGGCGCTTCTTCTCTGCAGTCTGCTCATGACCTCTTAAGACCAGGGGTTTTAAGGCTAGAGGTAAGAACAGGAGCTGCTCAAGTGGAAGGTGGAGTTCATGGGTTGGTTTCTTACGAGAAGAAGTCATTTTGA

Protein Analysis

135

Amino Acids

14.47

Weight (kDa)

9.69

Isoelectric Point (pI)

19.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMPDH PF00478 1 - 125 9e-25 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 3 cut(s) 28, 234, 239
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 310
AgsI TTSAA 1 cut(s) 122
AjnI CCWGG 2 cut(s) 37, 316
AluBI AGCT 4 cut(s) 12, 20, 172, 350
AluI AGCT 4 cut(s) 12, 20, 172, 350
Alw26I GTCTC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 39, 318
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 290
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 39, 318
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 39, 318
BpuEI CTTGAG 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 37, 38, 103, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 109
BseBI CCWGG 2 cut(s) 39, 318
BseDI CCNNGG 4 cut(s) 37, 38, 103, 317
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 21, 57
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 219
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 142, 271
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 22, 58
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 37, 38, 103, 317
BssMI GATC 2 cut(s) 142, 271
Bst2UI CCWGG 2 cut(s) 39, 318
Bst4CI ACNGT 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 16, 30, 66
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 145, 274
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 142, 271
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 39, 318
BstSCI CCNGG 2 cut(s) 37, 316
BstSFI CTRYAG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 27, 233, 238
CviAII CATG 3 cut(s) 109, 302, 374
CviJI RGCY 8 cut(s) 12, 20, 35, 44, 114, 172, 331, 350
CviKI_1 RGCY 8 cut(s) 12, 20, 35, 44, 114, 172, 331, 350
CviQI GTAC 3 cut(s) 27, 233, 238
DdeI CTNAG 3 cut(s) 16, 30, 66
DpnI GATC 2 cut(s) 144, 273
DpnII GATC 2 cut(s) 142, 271
DraI TTTAAA 1 cut(s) 225
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 37, 316
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 3 cut(s) 112, 305, 377
FaiI YATR 4 cut(s) 48, 110, 303, 375
FatI CATG 3 cut(s) 108, 301, 373
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 351
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 88
HhaI GCGC 1 cut(s) 281
Hin1II CATG 3 cut(s) 112, 305, 377
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 119, 302
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 182, 200, 206, 247, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 16, 30, 66
Hsp92II CATG 3 cut(s) 112, 305, 377
HspAI GCGC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 142, 271
LmnI GCTCC 2 cut(s) 9, 347
Lsp1109I GCAGC 1 cut(s) 337
MaeI CTAG 1 cut(s) 332
MalI GATC 2 cut(s) 144, 273
MboI GATC 2 cut(s) 142, 271
MboII GAAGA 3 cut(s) 187, 276, 406
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 4 cut(s) 25, 98, 317, 328
MseI TTAA 3 cut(s) 224, 311, 326
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 39, 318
MvaI CCWGG 2 cut(s) 39, 318
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 142, 271
NlaIII CATG 3 cut(s) 112, 305, 377
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 255
PagI TCATGA 1 cut(s) 301
PasI CCCWGGG 1 cut(s) 38
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 37, 316
PspGI CCWGG 2 cut(s) 37, 316
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 3 cut(s) 28, 234, 239
RsaNI GTAC 3 cut(s) 27, 233, 238
SaqAI TTAA 3 cut(s) 224, 311, 326
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 142, 271
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 39, 318
SduI GDGCHC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 310, 354
SmoI CTYRAG 2 cut(s) 310, 354
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 37, 316
TaaI ACNGT 1 cut(s) 237
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 224, 311, 326
Tru9I TTAA 3 cut(s) 224, 311, 326
TscAI CASTG 1 cut(s) 258
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 1 cut(s) 258
Vha464I CTTAAG 1 cut(s) 310
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.