pycom10g18050

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
21184543 .. 21187342
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18050.1

Sequence Viewer

Length: 747 bp
ATGGTGAACTGTACGGACTTCACGGTGCCGTGGAGTTACGATTTGGGGGCTATTGGGGAGTACATGGAGGAGAAAAAACGAGATGTGGTGGCGACTGTGAGGGAAAATGAGGTGGTGGATGTGGTGGCGAAGGAGGAGGTGGCGAGGATTAAAGGGTACCCCAAATTGGGGGTTGGGACGGTGGGTCCCTACGGGACGTGGCGGGTTGGGGCGGGGACGAGGGAGTCGGATAAGGAGAGGTTGGAGGAGTTGGTGAAGGCAGGGGTGGATGTAGCGGTGTTGGGTAGCTCTCAGGGGAACTCCATTTATCAGATGATAAAGTATGTGAAGAAAATGTACTCGAATTTGGATGTAGTTGGCGGGAATGTGGTGACGGTGAGTCAGGCGCAGAATTTGATTCAGGCTGGTGTTGACGGGTTGAGGGTTGGAATGGGGTCTGGCTCAATTTGTACCACTCAAGAGGTCTGCGCTGTTGGTCGCGGACAGGCAACTGCTGTTTACAAGGTTGCGTCTATTGCTTCGCAAAGTGGTGTGCCTGTGATTGCTGATGGTGGAATTTCCAATTCTGGACACATTGTCAAGGCTTTGGTCCTTGGGGCTTCTATTGTCATGATGGGAAGCTTCTTAGCTGGAAGCACTGAGAGGCTCCTGGGGTTTTTGTGTATCAGAGGCTCTCGGGGTTTTTGTGTATCAGAATGGTCGCCGAGTAAAAAAAATATCGATGCATGGGGTCTCTTGAAGCAATGA

Protein Analysis

249

Amino Acids

26.25

Weight (kDa)

8.21

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMPDH PF00478 45 - 215 2.6e-55 IMP dehydrogenase / GMP reductase domain
NMO PF03060 115 - 209 2.1e-06 Nitronate monooxygenase
FMN_dh PF01070 117 - 206 1.4e-07 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
Acc65I GGTACC 1 cut(s) 156
AccB1I GGYRCC 2 cut(s) 25, 156
AccII CGCG 1 cut(s) 480
AciI CCGC 5 cut(s) 202, 212, 275, 360, 480
AcsI RAATTY 3 cut(s) 343, 391, 555
AfaI GTAC 5 cut(s) 13, 62, 158, 338, 451
AfiI CCNNNNNNNGG 3 cut(s) 166, 167, 168
AgsI TTSAA 1 cut(s) 739
AhdI GACNNNNNGTC 3 cut(s) 183, 378, 575
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 3 cut(s) 288, 621, 629
AluI AGCT 3 cut(s) 288, 621, 629
Alw26I GTCTC 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 675
ApoI RAATTY 3 cut(s) 343, 391, 555
Asp718I GGTACC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 388, 470
AspS9I GGNCC 2 cut(s) 185, 589
AsuHPI GGTGA 4 cut(s) 16, 265, 382, 388
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 2 cut(s) 185, 589
BanI GGYRCC 2 cut(s) 25, 156
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BccI CCATC 2 cut(s) 542, 607
BceAI ACGGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 650
BcoDI GTCTC 1 cut(s) 737
Bme1390I CCNGG 1 cut(s) 650
Bme18I GGWCC 2 cut(s) 185, 589
BmeRI GACNNNNNGTC 3 cut(s) 183, 378, 575
BmeT110I CYCGRG 1 cut(s) 675
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 185, 589
BmiI GGNNCC 5 cut(s) 27, 158, 186, 187, 647
BmrFI CCNGG 1 cut(s) 650
BmsI GCATC 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 29, 592, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 167, 168
BseBI CCWGG 1 cut(s) 650
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 3 cut(s) 29, 592, 649
BseGI GGATG 3 cut(s) 124, 274, 355
BseLI CCNNNNNNNGG 3 cut(s) 166, 167, 168
BseMII CTCAG 2 cut(s) 305, 630
BseRI GAGGAG 3 cut(s) 83, 149, 260
Bsh1236I CGCG 1 cut(s) 480
BshNI GGYRCC 2 cut(s) 25, 156
BshVI ATCGAT 1 cut(s) 720
BsiHKCI CYCGRG 1 cut(s) 675
BslFI GGGAC 4 cut(s) 171, 190, 208, 229
BslI CCNNNNNNNGG 3 cut(s) 166, 167, 168
BsmAI GTCTC 1 cut(s) 737
BsmFI GGGAC 4 cut(s) 171, 190, 208, 229
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 675
BspACI CCGC 5 cut(s) 202, 212, 275, 360, 480
BspCNI CTCAG 2 cut(s) 304, 631
BspDI ATCGAT 1 cut(s) 720
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 5 cut(s) 27, 158, 186, 187, 647
BspT107I GGYRCC 2 cut(s) 25, 156
BspTNI GGTCTC 1 cut(s) 737
BssECI CCNNGG 3 cut(s) 29, 592, 649
BssT1I CCWWGG 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 5 cut(s) 11, 25, 97, 181, 376
BstDEI CTNAG 3 cut(s) 291, 625, 639
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 3 cut(s) 124, 274, 355
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 2 cut(s) 388, 470
BstMAI GTCTC 1 cut(s) 737
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 648
BstUI CGCG 1 cut(s) 480
Bsu15I ATCGAT 1 cut(s) 720
BsuTUI ATCGAT 1 cut(s) 720
BtgI CCRYGG 1 cut(s) 29
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 3 cut(s) 124, 274, 355
BtsIMutI CAGTG 1 cut(s) 636
CciI TCATGA 1 cut(s) 609
CfoI GCGC 2 cut(s) 388, 470
Cfr13I GGNCC 2 cut(s) 185, 589
ClaI ATCGAT 1 cut(s) 720
CseI GACGC 1 cut(s) 498
Csp6I GTAC 5 cut(s) 12, 61, 157, 337, 450
CviAII CATG 3 cut(s) 64, 610, 726
CviQI GTAC 5 cut(s) 12, 61, 157, 337, 450
DdeI CTNAG 3 cut(s) 291, 625, 639
DrdI GACNNNNNNGTC 1 cut(s) 223
DriI GACNNNNNGTC 3 cut(s) 183, 378, 575
DseDI GACNNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 3 cut(s) 183, 378, 575
Eco130I CCWWGG 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 185, 589
Eco88I CYCGRG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 648
EcoT14I CCWWGG 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 3 cut(s) 67, 613, 729
FaiI YATR 4 cut(s) 65, 324, 611, 727
FaqI GGGAC 4 cut(s) 171, 190, 208, 229
FatI CATG 3 cut(s) 63, 609, 725
FauI CCCGC 3 cut(s) 195, 205, 353
FokI GGATG 3 cut(s) 131, 281, 362
GlaI GCGC 2 cut(s) 387, 469
HgaI GACGC 1 cut(s) 498
HhaI GCGC 2 cut(s) 388, 470
Hin1II CATG 3 cut(s) 67, 613, 729
Hin6I GCGC 2 cut(s) 386, 468
HinP1I GCGC 2 cut(s) 386, 468
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 619
HinfI GANTC 3 cut(s) 224, 379, 397
HphI GGTGA 4 cut(s) 16, 265, 382, 388
Hpy166II GTNNAC 3 cut(s) 7, 412, 499
Hpy188I TCNGA 4 cut(s) 229, 312, 668, 694
Hpy188III TCNNGA 4 cut(s) 458, 567, 610, 736
Hpy8I GTNNAC 3 cut(s) 7, 412, 499
HpyAV CCTTC 2 cut(s) 124, 250
HpyCH4III ACNGT 5 cut(s) 11, 25, 97, 181, 376
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 3 cut(s) 291, 625, 639
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 67, 613, 729
HspAI GCGC 2 cut(s) 386, 468
KflI GGGWCCC 1 cut(s) 185
KpnI GGTACC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 651
LweI GCATC 1 cut(s) 712
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 35, 370
MboII GAAGA 1 cut(s) 340
MluCI AATT 6 cut(s) 164, 343, 391, 444, 555, 562
MlyI GAGTC 2 cut(s) 233, 388
MmeI TCCRAC 3 cut(s) 207, 222, 406
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 650
MvaI CCWGG 1 cut(s) 650
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 1 cut(s) 515
NlaIII CATG 3 cut(s) 67, 613, 729
NlaIV GGNNCC 5 cut(s) 27, 158, 186, 187, 647
NmeAIII GCCGAG 1 cut(s) 729
NmuCI GTSAC 1 cut(s) 370
NsiI ATGCAT 1 cut(s) 727
PagI TCATGA 1 cut(s) 609
PfeI GAWTC 1 cut(s) 397
PleI GAGTC 2 cut(s) 232, 387
PpsI GAGTC 2 cut(s) 232, 387
PpuMI RGGWCCY 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 5 cut(s) 27, 158, 186, 187, 647
PspPI GGNCC 2 cut(s) 185, 589
PspPPI RGGWCCY 1 cut(s) 185
RsaI GTAC 5 cut(s) 13, 62, 158, 338, 451
RsaNI GTAC 5 cut(s) 12, 61, 157, 337, 450
SaqAI TTAA 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 185, 589
SchI GAGTC 2 cut(s) 233, 388
ScrFI CCNGG 1 cut(s) 650
SetI ASST 9 cut(s) 114, 141, 200, 242, 290, 465, 507, 623, 631
SfaNI GCATC 1 cut(s) 712
SinI GGWCC 2 cut(s) 185, 589
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 6 cut(s) 164, 343, 391, 444, 555, 562
SsiI CCGC 5 cut(s) 202, 212, 275, 360, 480
StyD4I CCNGG 1 cut(s) 648
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 5 cut(s) 11, 25, 97, 181, 376
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 341, 720
TasI AATT 6 cut(s) 164, 343, 391, 444, 555, 562
TatI WGTACW 2 cut(s) 60, 336
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 643
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 643
VpaK11BI GGWCC 2 cut(s) 185, 589
XapI RAATTY 3 cut(s) 343, 391, 555
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.