Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

6848638 .. 6849477

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTGAGGTCAGCAGCGGCCAAGATGTGCCCGGAATTAAGCTGTTTGGGACAACCATTACATTGCAGAACAAACAAGTAGTACTAAAAGATGATGATGATCATCGTCAACCCAAGAAAGCCGACGACGTTCATGACCAAACGGTGGAGATGAAGAGGCCGGAGAAGATCATACCATGCCCTAGATGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAATAACTACAATGTAAACCAGCCTAGACACTTCTGCAAGGGCTGTCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTGCCTGTGGGAGCCGGCCGTCGGAAAACCAAGCCTCCGGGCCGGGAGTTGGCCGGTTTCCCGGAGGGTTGTTTGTATGACGCTTCAGAGGTGGTGCACCAGTTTGAGTTGGATGGGGTGGTGGAAGAGTGGCACGTGGCGGCGGTACAAGGCGATTTCCGACATGTTTTTCCGGTGGTGAAGCGGCGGCGGAGTGGCTCAGGTGGTCAAACGTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

173

Amino Acids

19.45

Weight (kDa)

8.85

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	56 - 111	1.9e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	145
AciI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
AcoI	YGGCCR	4 cut(s)	19, 279, 316, 351
AcuI	CTGAAG	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	436
AfaI	GTAC	3 cut(s)	84, 272, 447
AfiI	CCNNNNNNNGG	3 cut(s)	145, 321, 349
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	43, 519
AluI	AGCT	2 cut(s)	43, 519
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	395
AoxI	GGCC	7 cut(s)	19, 158, 279, 288, 316, 340, 351
ApaI	GGGCCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	15, 516
AspS9I	GGNCC	3 cut(s)	288, 289, 340
AsuC2I	CCSGG	4 cut(s)	33, 339, 344, 362
AsuHPI	GGTGA	1 cut(s)	490
BaeGI	GKGCMC	3 cut(s)	33, 292, 399
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	2 cut(s)	294, 303
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	4 cut(s)	33, 339, 344, 362
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	183, 243
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	6 cut(s)	16, 19, 441, 485, 488, 517
BlsI	GCNGC	6 cut(s)	17, 20, 442, 486, 489, 518
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	4 cut(s)	33, 339, 344, 362
BmgT120I	GGNCC	3 cut(s)	288, 289, 340
BmiI	GGNNCC	3 cut(s)	289, 290, 313
BmrFI	CCNGG	4 cut(s)	33, 339, 344, 362
BmsI	GCATC	1 cut(s)	176
Bpu10I	CCTNAGC	2 cut(s)	6, 499
BpuMI	CCSGG	4 cut(s)	33, 339, 344, 362
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	2 cut(s)	99, 102
BsaI	GGTCTC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 321, 349
Bse118I	RCCGGY	3 cut(s)	281, 314, 353
Bse1I	ACTGG	2 cut(s)	278, 400
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	2 cut(s)	99, 102
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	2 cut(s)	99, 102
BseLI	CCNNNNNNNGG	3 cut(s)	145, 321, 349
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	278, 400
BseSI	GKGCMC	3 cut(s)	33, 292, 399
BseX3I	CGGCCG	2 cut(s)	279, 316
BseXI	GCAGC	1 cut(s)	27
Bsh1285I	CGRYCG	2 cut(s)	282, 319
BshFI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BsiEI	CGRYCG	2 cut(s)	282, 319
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	145, 321, 349
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
Bso31I	GGTCTC	1 cut(s)	194
Bsp120I	GGGCCC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	33, 292, 399
Bsp143I	GATC	2 cut(s)	100, 168
BspACI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
BspANI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BspCNI	CTCAG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	289, 290, 313
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	62
BsrFI	RCCGGY	3 cut(s)	281, 314, 353
BsrI	ACTGG	2 cut(s)	278, 400
BssAI	RCCGGY	3 cut(s)	281, 314, 353
BssMI	GATC	2 cut(s)	100, 168
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	149, 420
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	283, 316
BstDEI	CTNAG	2 cut(s)	6, 499
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	103, 171
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	100, 168
BstMCI	CGRYCG	2 cut(s)	282, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 287
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	31, 337, 342, 360
BstSLI	GKGCMC	3 cut(s)	33, 292, 399
BstV1I	GCAGC	1 cut(s)	27
BstZI	CGGCCG	2 cut(s)	279, 316
BsuRI	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	283, 316
CciI	TCATGA	1 cut(s)	133
Cfr10I	RCCGGY	3 cut(s)	281, 314, 353
Cfr13I	GGNCC	3 cut(s)	288, 289, 340
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	3 cut(s)	83, 271, 446
CviAII	CATG	4 cut(s)	134, 177, 196, 464
CviQI	GTAC	3 cut(s)	83, 271, 446
DdeI	CTNAG	2 cut(s)	6, 499
DpnI	GATC	2 cut(s)	102, 170
DpnII	GATC	2 cut(s)	100, 168
EaeI	YGGCCR	4 cut(s)	19, 279, 316, 351
EagI	CGGCCG	2 cut(s)	279, 316
Eam1104I	CTCTTC	2 cut(s)	149, 420
EarI	CTCTTC	2 cut(s)	149, 420
EciI	GGCGGA	1 cut(s)	505
EclXI	CGGCCG	2 cut(s)	279, 316
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	194
Eco52I	CGGCCG	2 cut(s)	279, 316
Eco57I	CTGAAG	1 cut(s)	369
Eco72I	CACGTG	1 cut(s)	436
EcoO109I	RGGNCCY	2 cut(s)	288, 289
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	4 cut(s)	137, 180, 199, 467
FaiI	YATR	6 cut(s)	135, 173, 178, 197, 378, 465
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	133, 176, 195, 463
FauI	CCCGC	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	6 cut(s)	16, 19, 441, 485, 488, 517
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	6 cut(s)	16, 19, 441, 485, 488, 517
FspBI	CTAG	2 cut(s)	183, 243
GluI	GCNGC	6 cut(s)	16, 19, 441, 485, 488, 517
HaeIII	GGCC	7 cut(s)	21, 160, 281, 290, 318, 342, 353
HapII	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	4 cut(s)	137, 180, 199, 467
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HpaII	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	110, 235, 397
Hpy188I	TCNGA	4 cut(s)	267, 324, 388, 461
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	110, 235, 397
Hpy99I	CGWCG	3 cut(s)	128, 131, 324
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	4 cut(s)	129, 300, 435, 512
HpyCH4V	TGCA	5 cut(s)	67, 189, 255, 397, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 287
HpyF3I	CTNAG	2 cut(s)	6, 499
HpySE526I	ACGT	4 cut(s)	129, 300, 435, 512
Hsp92II	CATG	4 cut(s)	137, 180, 199, 467
KroI	GCCGGC	2 cut(s)	281, 314
KroNI	GCCGGC	2 cut(s)	283, 316
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 168
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	183, 243
MaeII	ACGT	4 cut(s)	129, 300, 435, 512
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	102, 170
MboI	GATC	2 cut(s)	100, 168
MboII	GAAGA	3 cut(s)	166, 178, 437
MhlI	GDGCHC	3 cut(s)	33, 292, 399
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	3 cut(s)	302, 390, 484
MnlI	CCTC	5 cut(s)	150, 261, 345, 358, 382
MroNI	GCCGGC	2 cut(s)	281, 314
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	18, 519
MspI	CCGG	9 cut(s)	33, 161, 282, 315, 338, 343, 354, 362, 473
MspR9I	CCNGG	4 cut(s)	33, 339, 344, 362
MwoI	GCNNNNNNNGC	2 cut(s)	186, 287
NaeI	GCCGGC	2 cut(s)	283, 316
NciI	CCSGG	4 cut(s)	33, 339, 344, 362
NdeII	GATC	2 cut(s)	100, 168
NgoMIV	GCCGGC	2 cut(s)	281, 314
NlaIII	CATG	4 cut(s)	137, 180, 199, 467
NlaIV	GGNNCC	3 cut(s)	289, 290, 313
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	133
PciI	ACATGT	1 cut(s)	463
PdiI	GCCGGC	2 cut(s)	283, 316
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	6 cut(s)	17, 20, 442, 486, 489, 518
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
PscI	ACATGT	1 cut(s)	463
PspCI	CACGTG	1 cut(s)	436
PspN4I	GGNNCC	3 cut(s)	289, 290, 313
PspOMI	GGGCCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	288, 289, 340
PvuII	CAGCTG	1 cut(s)	519
RsaI	GTAC	3 cut(s)	84, 272, 447
RsaNI	GTAC	3 cut(s)	83, 271, 446
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	6 cut(s)	16, 19, 441, 485, 488, 517
Sau3AI	GATC	2 cut(s)	100, 168
Sau96I	GGNCC	3 cut(s)	288, 289, 340
ScaI	AGTACT	1 cut(s)	84
ScrFI	CCNGG	4 cut(s)	33, 339, 344, 362
SduI	GDGCHC	3 cut(s)	33, 292, 399
SfaNI	GCATC	1 cut(s)	176
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	7 cut(s)	18, 285, 440, 443, 484, 487, 490
SspMI	CTAG	2 cut(s)	183, 243
StyD4I	CCNGG	4 cut(s)	31, 337, 342, 360
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	4 cut(s)	132, 303, 438, 515
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	4 cut(s)	21, 443, 487, 490
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	2 cut(s)	15, 516
TspDTI	ATGAA	2 cut(s)	122, 167
TspGWI	ACGGA	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	395
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	2 cut(s)	183, 243
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.