Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001516.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

329003 .. 329629

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001516.1_g000086.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggacaccgtcaccgagtcccacatggccgtctccatggccgccctcggcggcatcggcatcctccactccaacgccgcctcctccgaccaggcctccatggtcagatccgtcaagggccgccgcgtccccctcctttctgcccccgtcttcatgtcacgaggagaccgcatccacaacgacgacgttttcaaccacggcgccaatccctacgtcctcgtcacagagtccggcgcccccaactccaagcttttgggctacatggcgagccgcgattgggtgaagctggcggacaaggaggtcaagatttacgattacatggtcagctgtaaggacatggttttgccttggagctccgatttggggaagattgaggagttcatggcggagaaaggccgtgacgtggcggcgatggtgagggacgacgaagttgtcgacgttgtggggaaggaggacgtggagcggaacaaggggtacccaaagttgggggtcgggtcgtggaaggtcggggcggcgatagggacgagggagtcggataaggagagattggaggagttggtgaaggctgggattgatgtggtggttttggatagctcacagggaactccatttatcagattgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

208

Amino Acids

22.72

Weight (kDa)

5.63

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
Acc65I	GGTACC	1 cut(s)	474
AccB1I	GGYRCC	3 cut(s)	200, 233, 474
AccBSI	CCGCTC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	2 cut(s)	126, 273
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	27, 39
AcyI	GRCGYC	2 cut(s)	201, 234
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	5 cut(s)	277, 363, 403, 484, 485
AgsI	TTSAA	1 cut(s)	193
AjiI	CACGTC	2 cut(s)	403, 457
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	250, 286, 327, 354, 594
AluI	AGCT	5 cut(s)	250, 286, 327, 354, 594
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	37, 159
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	5 cut(s)	27, 39, 93, 118, 394
Asp718I	GGTACC	1 cut(s)	474
AspLEI	GCGC	2 cut(s)	203, 236
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	4 cut(s)	4, 292, 427, 571
BanI	GGYRCC	3 cut(s)	200, 233, 474
BanII	GRGCYC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	356
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	3 cut(s)	14, 214, 381
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	37, 159
BfoI	RGCGCY	2 cut(s)	204, 237
BisI	GCNGC	8 cut(s)	42, 52, 78, 121, 124, 271, 408, 513
BlsI	GCNGC	8 cut(s)	43, 53, 79, 122, 125, 272, 409, 514
Bme1390I	CCNGG	1 cut(s)	92
BmgBI	CACGTC	2 cut(s)	403, 457
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	202, 235, 476
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	63, 69, 180
BpiI	GAAGAC	1 cut(s)	142
BsaHI	GRCGYC	2 cut(s)	201, 234
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	5 cut(s)	36, 46, 99, 196, 347
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 80, 95, 110
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 363, 403, 484, 485
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	5 cut(s)	36, 46, 99, 196, 347
BseGI	GGATG	2 cut(s)	60, 171
BseLI	CCNNNNNNNGG	5 cut(s)	277, 363, 403, 484, 485
BseRI	GAGGAG	4 cut(s)	73, 177, 389, 566
BseYI	CCCAGC	1 cut(s)	566
Bsh1236I	CGCG	2 cut(s)	126, 273
BshFI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BshNI	GGYRCC	3 cut(s)	200, 233, 474
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	4 cut(s)	4, 113, 434, 535
BslI	CCNNNNNNNGG	5 cut(s)	277, 363, 403, 484, 485
BsmAI	GTCTC	2 cut(s)	37, 159
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	4 cut(s)	4, 113, 434, 535
BsnI	GGCC	5 cut(s)	29, 41, 95, 120, 396
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	2 cut(s)	36, 99
BspANI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BspFNI	CGCG	2 cut(s)	126, 273
BspLI	GGNNCC	3 cut(s)	202, 235, 476
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	3 cut(s)	200, 233, 474
BspTNI	GGTCTC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	463
BssECI	CCNNGG	5 cut(s)	36, 46, 99, 196, 347
BssMI	GATC	1 cut(s)	107
BssNI	GRCGYC	2 cut(s)	201, 234
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	3 cut(s)	36, 99, 347
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	10
BstACI	GRCGYC	2 cut(s)	201, 234
BstC8I	GCNNGC	2 cut(s)	268, 288
BstDSI	CCRYGG	3 cut(s)	36, 99, 196
BstF5I	GGATG	2 cut(s)	60, 171
BstFNI	CGCG	2 cut(s)	126, 273
BstH2I	RGCGCY	2 cut(s)	204, 237
BstHHI	GCGC	2 cut(s)	203, 236
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	37, 159
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	126, 273
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	5 cut(s)	29, 41, 95, 120, 396
BtgI	CCRYGG	3 cut(s)	36, 99, 196
BtgZI	GCGATG	1 cut(s)	425
BtrI	CACGTC	2 cut(s)	403, 457
BtsCI	GGATG	2 cut(s)	60, 171
Cac8I	GCNNGC	2 cut(s)	268, 288
CfoI	GCGC	2 cut(s)	203, 236
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	8 cut(s)	25, 37, 100, 154, 262, 319, 337, 382
CviQI	GTAC	1 cut(s)	475
DinI	GGCGCC	2 cut(s)	202, 235
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DrdI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
DseDI	GACNNNNNNGTC	3 cut(s)	299, 431, 529
EaeI	YGGCCR	2 cut(s)	27, 39
EciI	GGCGGA	2 cut(s)	305, 401
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	3 cut(s)	36, 99, 347
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	36, 99, 347
EcoT38I	GRGCYC	1 cut(s)	356
EgeI	GGCGCC	2 cut(s)	202, 235
EheI	GGCGCC	2 cut(s)	202, 235
ErhI	CCWWGG	3 cut(s)	36, 99, 347
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
FaiI	YATR	8 cut(s)	26, 38, 101, 155, 263, 320, 338, 383
FaqI	GGGAC	4 cut(s)	4, 113, 434, 535
FatI	CATG	8 cut(s)	24, 36, 99, 153, 261, 318, 336, 381
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	8 cut(s)	42, 52, 78, 121, 124, 271, 408, 513
FokI	GGATG	2 cut(s)	47, 158
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	8 cut(s)	42, 52, 78, 121, 124, 271, 408, 513
GlaI	GCGC	2 cut(s)	202, 235
GluI	GCNGC	8 cut(s)	42, 52, 78, 121, 124, 271, 408, 513
GsaI	CCCAGC	1 cut(s)	570
HaeII	RGCGCY	2 cut(s)	204, 237
HaeIII	GGCC	5 cut(s)	29, 41, 95, 120, 396
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	203, 236
Hin1I	GRCGYC	2 cut(s)	201, 234
Hin1II	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
Hin6I	GCGC	2 cut(s)	201, 234
HinP1I	GCGC	2 cut(s)	201, 234
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	17, 227, 530
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	4 cut(s)	4, 292, 427, 571
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	5 cut(s)	88, 107, 358, 535, 617
Hpy188III	TCNNGA	2 cut(s)	159, 304
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	4 cut(s)	185, 188, 428, 440
HpyAV	CCTTC	3 cut(s)	442, 496, 556
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	5 cut(s)	186, 213, 402, 438, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpySE526I	ACGT	5 cut(s)	186, 213, 402, 438, 456
Hsp92I	GRCGYC	2 cut(s)	201, 234
Hsp92II	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
HspAI	GCGC	2 cut(s)	201, 234
KasI	GGCGCC	2 cut(s)	200, 233
KpnI	GGTACC	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	3 cut(s)	351, 359, 460
LpnPI	CCDG	6 cut(s)	77, 104, 244, 272, 552, 584
LweI	GCATC	3 cut(s)	63, 69, 180
MaeII	ACGT	5 cut(s)	186, 213, 402, 438, 456
MaeIII	GTNAC	4 cut(s)	10, 156, 220, 398
MalI	GATC	1 cut(s)	109
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	1 cut(s)	107
MboII	GAAGA	2 cut(s)	142, 379
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	1 cut(s)	356
Mly113I	GGCGCC	2 cut(s)	201, 234
MlyI	GAGTC	3 cut(s)	26, 236, 539
MmeI	TCCRAC	3 cut(s)	96, 111, 513
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	126, 273
MwoI	GCNNNNNNNGC	1 cut(s)	57
NarI	GGCGCC	2 cut(s)	201, 234
NcoI	CCATGG	2 cut(s)	36, 99
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	8 cut(s)	28, 40, 103, 157, 265, 322, 340, 385
NlaIV	GGNNCC	3 cut(s)	202, 235, 476
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	4 cut(s)	10, 156, 220, 398
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	8 cut(s)	43, 53, 79, 122, 125, 272, 409, 514
PleI	GAGTC	3 cut(s)	25, 235, 538
PluTI	GGCGCC	2 cut(s)	204, 237
PpsI	GAGTC	3 cut(s)	25, 235, 538
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	202, 235, 476
PspPI	GGNCC	1 cut(s)	118
PsrI	GAACNNNNNNTAC	2 cut(s)	458, 490
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	356
SalI	GTCGAC	1 cut(s)	434
SatI	GCNGC	8 cut(s)	42, 52, 78, 121, 124, 271, 408, 513
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	26, 236, 539
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	3 cut(s)	63, 69, 180
SfoI	GGCGCC	2 cut(s)	202, 235
SseBI	AGGCCT	1 cut(s)	95
SspDI	GGCGCC	2 cut(s)	200, 233
SstI	GAGCTC	1 cut(s)	356
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	3 cut(s)	36, 99, 347
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	5 cut(s)	189, 216, 405, 441, 459
TaqI	TCGA	1 cut(s)	435
TauI	GCSGC	8 cut(s)	44, 54, 80, 123, 126, 273, 410, 515
TseFI	GTSAC	4 cut(s)	10, 156, 220, 398
Tsp45I	GTSAC	4 cut(s)	10, 156, 220, 398
TspDTI	ATGAA	2 cut(s)	142, 370
TspGWI	ACGGA	1 cut(s)	100
Tth111I	GACNNNGTC	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.