Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002862.1

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

538 .. 888

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002862.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggacactatcaccgagtcccacatggcagtctccatggccgccctttgcggcatcgacatcctccactccaacgccgcctcctccgaccaggcctccatggtcagatccgtcaaggtcggccgcgtccccctcatctctgcccccatcttcatgtcccgcggagaccgcatccacaacgacgaagttttcgaccacggcgccaatccctacatcctagtcactgagtccggcgcccccaactccaagcttttgggctacatagcgagccgcgattgggtgaagctggcggacaaggaggtcaagatttacgattacatggttagctgtaaggacatggttttgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

5.7

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	200, 233
AccII	CGCG	3 cut(s)	126, 162, 273
AciI	CCGC	9 cut(s)	42, 51, 78, 124, 160, 162, 169, 271, 290
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	39, 121
AcyI	GRCGYC	2 cut(s)	201, 234
AfiI	CCNNNNNNNGG	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	250, 286, 327
AluI	AGCT	3 cut(s)	250, 286, 327
Alw26I	GTCTC	2 cut(s)	37, 159
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	3 cut(s)	39, 93, 121
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	203, 236
AsuHPI	GGTGA	2 cut(s)	4, 292
BanI	GGYRCC	2 cut(s)	200, 233
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	37, 159
BfaI	CTAG	1 cut(s)	218
BfoI	RGCGCY	2 cut(s)	204, 237
BisI	GCNGC	5 cut(s)	42, 52, 78, 124, 271
BlsI	GCNGC	5 cut(s)	43, 53, 79, 125, 272
Bme1390I	CCNGG	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	202, 235
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	63, 180
BsaHI	GRCGYC	2 cut(s)	201, 234
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	36, 99, 160, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 80, 95, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	4 cut(s)	36, 99, 160, 196
BseGI	GGATG	3 cut(s)	60, 171, 213
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	73
BseX3I	CGGCCG	1 cut(s)	121
Bsh1236I	CGCG	3 cut(s)	126, 162, 273
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	41, 95, 123
BshNI	GGYRCC	2 cut(s)	200, 233
BsiEI	CGRYCG	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	3 cut(s)	4, 113, 142
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	37, 159
BsmFI	GGGAC	3 cut(s)	4, 113, 142
BsnI	GGCC	3 cut(s)	41, 95, 123
Bso31I	GGTCTC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	107
Bsp19I	CCATGG	2 cut(s)	36, 99
BspACI	CCGC	9 cut(s)	42, 51, 78, 124, 160, 162, 169, 271, 290
BspANI	GGCC	3 cut(s)	41, 95, 123
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	126, 162, 273
BspLI	GGNNCC	2 cut(s)	202, 235
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	200, 233
BspTNI	GGTCTC	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	36, 99, 160, 196
BssMI	GATC	1 cut(s)	107
BssNI	GRCGYC	2 cut(s)	201, 234
BssT1I	CCWWGG	2 cut(s)	36, 99
Bst2UI	CCWGG	1 cut(s)	92
BstACI	GRCGYC	2 cut(s)	201, 234
BstC8I	GCNNGC	2 cut(s)	268, 288
BstDEI	CTNAG	2 cut(s)	225, 348
BstDSI	CCRYGG	4 cut(s)	36, 99, 160, 196
BstF5I	GGATG	3 cut(s)	60, 171, 213
BstFNI	CGCG	3 cut(s)	126, 162, 273
BstH2I	RGCGCY	2 cut(s)	204, 237
BstHHI	GCGC	2 cut(s)	203, 236
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	37, 159
BstMBI	GATC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	3 cut(s)	126, 162, 273
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	41, 95, 123
BtgI	CCRYGG	4 cut(s)	36, 99, 160, 196
BtsCI	GGATG	3 cut(s)	60, 171, 213
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	268, 288
CfoI	GCGC	2 cut(s)	203, 236
Cfr42I	CCGCGG	1 cut(s)	163
CseI	GACGC	1 cut(s)	115
CviAII	CATG	6 cut(s)	25, 37, 100, 154, 319, 337
CviJI	RGCY	8 cut(s)	41, 95, 123, 250, 258, 270, 286, 327
CviKI_1	RGCY	8 cut(s)	41, 95, 123, 250, 258, 270, 286, 327
DdeI	CTNAG	2 cut(s)	225, 348
DinI	GGCGCC	2 cut(s)	202, 235
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	39, 121
EagI	CGGCCG	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	36, 99
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	36, 99
EgeI	GGCGCC	2 cut(s)	202, 235
EheI	GGCGCC	2 cut(s)	202, 235
ErhI	CCWWGG	2 cut(s)	36, 99
FaeI	CATG	6 cut(s)	28, 40, 103, 157, 322, 340
FaiI	YATR	7 cut(s)	26, 38, 101, 155, 263, 320, 338
FaqI	GGGAC	3 cut(s)	4, 113, 142
FatI	CATG	6 cut(s)	24, 36, 99, 153, 318, 336
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	5 cut(s)	42, 52, 78, 124, 271
FokI	GGATG	3 cut(s)	47, 158, 200
Fsp4HI	GCNGC	5 cut(s)	42, 52, 78, 124, 271
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	2 cut(s)	202, 235
GluI	GCNGC	5 cut(s)	42, 52, 78, 124, 271
HaeII	RGCGCY	2 cut(s)	204, 237
HaeIII	GGCC	3 cut(s)	41, 95, 123
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	203, 236
Hin1I	GRCGYC	2 cut(s)	201, 234
Hin1II	CATG	6 cut(s)	28, 40, 103, 157, 322, 340
Hin6I	GCGC	2 cut(s)	201, 234
HinP1I	GCGC	2 cut(s)	201, 234
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	17, 227
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	4, 292
Hpy188I	TCNGA	2 cut(s)	88, 107
Hpy188III	TCNNGA	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	225, 348
Hsp92I	GRCGYC	2 cut(s)	201, 234
Hsp92II	CATG	6 cut(s)	28, 40, 103, 157, 322, 340
HspAI	GCGC	2 cut(s)	201, 234
KasI	GGCGCC	2 cut(s)	200, 233
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	77, 104, 244, 272
LweI	GCATC	2 cut(s)	63, 180
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	107
Mly113I	GGCGCC	2 cut(s)	201, 234
MlyI	GAGTC	2 cut(s)	26, 236
MmeI	TCCRAC	2 cut(s)	96, 111
MnlI	CCTC	6 cut(s)	74, 91, 94, 106, 143, 292
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	3 cut(s)	126, 162, 273
MwoI	GCNNNNNNNGC	1 cut(s)	168
NarI	GGCGCC	2 cut(s)	201, 234
NcoI	CCATGG	2 cut(s)	36, 99
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	6 cut(s)	28, 40, 103, 157, 322, 340
NlaIV	GGNNCC	2 cut(s)	202, 235
NmuCI	GTSAC	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PkrI	GCNGC	5 cut(s)	43, 53, 79, 125, 272
PleI	GAGTC	2 cut(s)	25, 235
PluTI	GGCGCC	2 cut(s)	204, 237
PpsI	GAGTC	2 cut(s)	25, 235
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	202, 235
PsuI	RGATCY	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	163
SatI	GCNGC	5 cut(s)	42, 52, 78, 124, 271
Sau3AI	GATC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	26, 236
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	5 cut(s)	120, 252, 288, 303, 329
SfaNI	GCATC	2 cut(s)	63, 180
SfoI	GGCGCC	2 cut(s)	202, 235
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	9 cut(s)	42, 51, 78, 124, 160, 162, 169, 271, 290
SspDI	GGCGCC	2 cut(s)	200, 233
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	36, 99
TaqI	TCGA	2 cut(s)	57, 192
TauI	GCSGC	5 cut(s)	44, 54, 80, 126, 273
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	229
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.