Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000729

Physical Location & Seq

Genomic Coordinates Reverse (-)

65216192 .. 65216971

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGACACCGTCATCGAGTCCCACATGGCCGTCTCCATGGCCGCCCTCGGCGACATCGGCATCCTCCACTCCAACGCCGCCTCCTCCGACCAGGCCGCCATGGTCAGATCCGTCAAGGGCCGCCACGTCCCCCTCCTTTCTGCCCCCGTCTTCATGTCCAGAGGAGACCGCATCCACAACGACGACGTTTTCAACCACGGCGCCAATCCCTACATCCTCGTCACTGAGTCCGGCGCCCCCAACTCCAAGCTTTTGGGCTACATGGCGAGCCGCGATTGGGTGAAGCTGGCGGACAAGGAGGTCAAGATTTACAATTACATGCTCACAGGGAACTCCATTTATCAGATTGAGATGATCAAGTACATCAAGAAAATGTACTCAGATTTGGATGTGGTTGGTGGGAATGTGGTGACTGTGAGTCAGGCACAGAATTTGATTCAGGCTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTCTGGCTCCATTTGTACTACTCAAGAGGTTTGCGCCGTCGGCAGGGGACAGATTATTAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006183 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0050896 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110

Pfam Domains

Protein Families

IMPDH

Protein Analysis

179

Amino Acids

19.19

Weight (kDa)

6.5

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMPDH	PF00478	1 - 176	1.7e-32	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16350 AT1G79470
fragaria_vesca	FvH4_3g14430 FvH4_3g14430
malus_domestica	MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica	Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis	pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis	RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata	RLG00000032733
rosa_multiflora	Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii	Rroxscaffold_1G00055450
rosa_rugosa	Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha	Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana	Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	200, 233
AccII	CGCG	1 cut(s)	273
AciI	CCGC	7 cut(s)	42, 78, 96, 121, 169, 271, 290
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	27, 39
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	2 cut(s)	201, 234
AfaI	GTAC	3 cut(s)	362, 377, 490
AfiI	CCNNNNNNNGG	2 cut(s)	277, 516
AgsI	TTSAA	1 cut(s)	193
AhdI	GACNNNNNGTC	1 cut(s)	417
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	250, 286
AluI	AGCT	2 cut(s)	250, 286
Alw26I	GTCTC	2 cut(s)	37, 159
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	4 cut(s)	27, 39, 93, 118
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	3 cut(s)	203, 236, 509
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	292, 421
BanI	GGYRCC	2 cut(s)	200, 233
BbsI	GAAGAC	1 cut(s)	142
BccI	CCATC	2 cut(s)	446, 463
BceAI	ACGGC	3 cut(s)	14, 214, 494
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	37, 159
BfoI	RGCGCY	2 cut(s)	204, 237
BisI	GCNGC	5 cut(s)	42, 78, 96, 121, 271
BlsI	GCNGC	5 cut(s)	43, 79, 97, 122, 272
Bme1390I	CCNGG	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	202, 235, 481
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	69, 180
BpiI	GAAGAC	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	201, 234
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	36, 46, 99, 196
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 516
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	4 cut(s)	36, 46, 99, 196
BseGI	GGATG	5 cut(s)	60, 171, 213, 394, 474
BseLI	CCNNNNNNNGG	2 cut(s)	277, 516
BseMII	CTCAG	2 cut(s)	216, 393
BseRI	GAGGAG	2 cut(s)	73, 177
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	29, 41, 95, 120
BshNI	GGYRCC	2 cut(s)	200, 233
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	3 cut(s)	4, 113, 534
BslI	CCNNNNNNNGG	2 cut(s)	277, 516
BsmAI	GTCTC	2 cut(s)	37, 159
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	3 cut(s)	4, 113, 534
BsnI	GGCC	4 cut(s)	29, 41, 95, 120
Bso31I	GGTCTC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	107, 354
Bsp19I	CCATGG	2 cut(s)	36, 99
BspACI	CCGC	7 cut(s)	42, 78, 96, 121, 169, 271, 290
BspANI	GGCC	4 cut(s)	29, 41, 95, 120
BspCNI	CTCAG	2 cut(s)	217, 392
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	202, 235, 481
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	200, 233
BspTNI	GGTCTC	1 cut(s)	159
BssECI	CCNNGG	4 cut(s)	36, 46, 99, 196
BssMI	GATC	2 cut(s)	107, 354
BssNI	GRCGYC	2 cut(s)	201, 234
BssT1I	CCWWGG	2 cut(s)	36, 99
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	10, 415
BstACI	GRCGYC	2 cut(s)	201, 234
BstC8I	GCNNGC	2 cut(s)	268, 288
BstDEI	CTNAG	2 cut(s)	225, 379
BstDSI	CCRYGG	3 cut(s)	36, 99, 196
BstF5I	GGATG	5 cut(s)	60, 171, 213, 394, 474
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	2 cut(s)	204, 237
BstHHI	GCGC	3 cut(s)	203, 236, 509
BstKTI	GATC	2 cut(s)	110, 357
BstMAI	GTCTC	2 cut(s)	37, 159
BstMBI	GATC	2 cut(s)	107, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 513
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	29, 41, 95, 120
BtgI	CCRYGG	3 cut(s)	36, 99, 196
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	60, 171, 213, 394, 474
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	268, 288
CfoI	GCGC	3 cut(s)	203, 236, 509
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	361, 376, 489
CviAII	CATG	6 cut(s)	25, 37, 100, 154, 262, 319
CviQI	GTAC	3 cut(s)	361, 376, 489
DdeI	CTNAG	2 cut(s)	225, 379
DinI	GGCGCC	2 cut(s)	202, 235
DpnI	GATC	2 cut(s)	109, 356
DpnII	GATC	2 cut(s)	107, 354
DrdI	GACNNNNNNGTC	1 cut(s)	299
DriI	GACNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	27, 39
Eam1105I	GACNNNNNGTC	1 cut(s)	417
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	36, 99
Eco31I	GGTCTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	36, 99
EgeI	GGCGCC	2 cut(s)	202, 235
EheI	GGCGCC	2 cut(s)	202, 235
ErhI	CCWWGG	2 cut(s)	36, 99
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	28, 40, 103, 157, 265, 322
FaiI	YATR	6 cut(s)	26, 38, 101, 155, 263, 320
FaqI	GGGAC	3 cut(s)	4, 113, 534
FatI	CATG	6 cut(s)	24, 36, 99, 153, 261, 318
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	42, 78, 96, 121, 271
FokI	GGATG	5 cut(s)	47, 158, 200, 401, 481
Fsp4HI	GCNGC	5 cut(s)	42, 78, 96, 121, 271
GlaI	GCGC	3 cut(s)	202, 235, 508
GluI	GCNGC	5 cut(s)	42, 78, 96, 121, 271
HaeII	RGCGCY	2 cut(s)	204, 237
HaeIII	GGCC	4 cut(s)	29, 41, 95, 120
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	3 cut(s)	203, 236, 509
Hin1I	GRCGYC	2 cut(s)	201, 234
Hin1II	CATG	6 cut(s)	28, 40, 103, 157, 265, 322
Hin6I	GCGC	3 cut(s)	201, 234, 507
HinP1I	GCGC	3 cut(s)	201, 234, 507
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	4 cut(s)	17, 227, 418, 436
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	292, 421
Hpy188I	TCNGA	4 cut(s)	88, 107, 345, 382
Hpy188III	TCNNGA	4 cut(s)	159, 304, 367, 497
Hpy99I	CGWCG	3 cut(s)	185, 188, 515
HpyCH4III	ACNGT	2 cut(s)	10, 415
HpyCH4IV	ACGT	2 cut(s)	126, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 513
HpyF3I	CTNAG	2 cut(s)	225, 379
HpySE526I	ACGT	2 cut(s)	126, 186
Hsp92I	GRCGYC	2 cut(s)	201, 234
Hsp92II	CATG	6 cut(s)	28, 40, 103, 157, 265, 322
HspAI	GCGC	3 cut(s)	201, 234, 507
KasI	GGCGCC	2 cut(s)	200, 233
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	107, 354
LmnI	GCTCC	1 cut(s)	485
LweI	GCATC	2 cut(s)	69, 180
MaeII	ACGT	2 cut(s)	126, 186
MaeIII	GTNAC	2 cut(s)	220, 409
MalI	GATC	2 cut(s)	109, 356
MboI	GATC	2 cut(s)	107, 354
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	107
MluCI	AATT	2 cut(s)	313, 430
Mly113I	GGCGCC	2 cut(s)	201, 234
MlyI	GAGTC	3 cut(s)	26, 236, 427
MmeI	TCCRAC	2 cut(s)	96, 111
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	57, 513
NarI	GGCGCC	2 cut(s)	201, 234
NcoI	CCATGG	2 cut(s)	36, 99
NdeII	GATC	2 cut(s)	107, 354
NlaIII	CATG	6 cut(s)	28, 40, 103, 157, 265, 322
NlaIV	GGNNCC	3 cut(s)	202, 235, 481
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	220, 409
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	43, 79, 97, 122, 272
PleI	GAGTC	3 cut(s)	25, 235, 426
PluTI	GGCGCC	2 cut(s)	204, 237
PpsI	GAGTC	3 cut(s)	25, 235, 426
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	202, 235, 481
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	107
PsyI	GACNNNGTC	1 cut(s)	8
RsaI	GTAC	3 cut(s)	362, 377, 490
RsaNI	GTAC	3 cut(s)	361, 376, 489
SatI	GCNGC	5 cut(s)	42, 78, 96, 121, 271
Sau3AI	GATC	2 cut(s)	107, 354
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	26, 236, 427
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	6 cut(s)	129, 189, 252, 288, 303, 504
SfaNI	GCATC	2 cut(s)	69, 180
SfoI	GGCGCC	2 cut(s)	202, 235
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	313, 430
SsiI	CCGC	7 cut(s)	42, 78, 96, 121, 169, 271, 290
SspDI	GGCGCC	2 cut(s)	200, 233
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	36, 99
TaaI	ACNGT	2 cut(s)	10, 415
TaiI	ACGT	2 cut(s)	129, 189
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	313, 430
TatI	WGTACW	3 cut(s)	360, 375, 488
TauI	GCSGC	5 cut(s)	44, 80, 98, 123, 273
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	220, 409
Tsp45I	GTSAC	2 cut(s)	220, 409
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.