Rmu_sc0017907.1_g000002

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017907.1
Physical Location & Seq
Reverse (-)
3113 .. 3778
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017907.1_g000002.1.cds

Sequence Viewer

Length: 351 bp
atgtactcagatttggatgtggttggtgggaatgtggtgactgtgagtcaggcacagaatttgattcaggctggtgttgatgggttgaaggttgggatggggtctggctccatttgtactagtcaagaggtttgcgccgtcggcaggggacaggcaactgcggtttacaaggttgcatctgttgcttcacaaagtggtgtgcctgtcattgctgatggtggaatttccaattctggacacattgtcaaggctttaacccttggggcttctactgtcatgatgggaagcttcttagctggaagcactgaggctcctggggcttatgagtatcaggtaatgcctgagatatga

Protein Analysis

116

Amino Acids

11.54

Weight (kDa)

4.5

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 58, 222
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 2 cut(s) 5, 118
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 1 cut(s) 88
AhdI GACNNNNNGTC 2 cut(s) 45, 242
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 2 cut(s) 288, 296
AluI AGCT 2 cut(s) 288, 296
ApoI RAATTY 2 cut(s) 58, 222
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 49
BccI CCATC 4 cut(s) 74, 91, 209, 274
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 315
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 315
BmeRI GACNNNNNGTC 2 cut(s) 45, 242
BmiI GGNNCC 2 cut(s) 109, 312
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 259, 314
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 259, 314
BseGI GGATG 2 cut(s) 22, 102
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 3 cut(s) 21, 297, 333
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 162
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 3 cut(s) 20, 298, 334
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 109, 312
BsrDI GCAATG 1 cut(s) 207
BssECI CCNNGG 2 cut(s) 259, 314
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 43, 274
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 4 cut(s) 7, 292, 306, 342
BstF5I GGATG 2 cut(s) 22, 102
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 141, 182, 317
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 22, 102
BtsIMutI CAGTG 1 cut(s) 303
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 4, 117
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 71, 108, 251, 266, 288, 296, 311, 320
CviKI_1 RGCY 8 cut(s) 71, 108, 251, 266, 288, 296, 311, 320
CviQI GTAC 2 cut(s) 4, 117
DdeI CTNAG 4 cut(s) 7, 292, 306, 342
DraIII CACNNNGTG 1 cut(s) 194
DriI GACNNNNNGTC 2 cut(s) 45, 242
Eam1105I GACNNNNNGTC 2 cut(s) 45, 242
Eco130I CCWWGG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 280
FaiI YATR 3 cut(s) 278, 324, 349
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 276
FokI GGATG 2 cut(s) 29, 109
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 46, 64
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 125, 234, 277
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 2 cut(s) 43, 274
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 182, 317
HpyF3I CTNAG 4 cut(s) 7, 292, 306, 342
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 113, 316
LweI GCATC 1 cut(s) 185
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 37
MluCI AATT 3 cut(s) 58, 222, 229
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 2 cut(s) 121, 301
MseI TTAA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 141, 182, 317
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 109, 312
NmuCI GTSAC 1 cut(s) 37
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 1 cut(s) 64
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 109, 312
RsaI GTAC 2 cut(s) 5, 118
RsaNI GTAC 2 cut(s) 4, 117
SaqAI TTAA 1 cut(s) 254
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 315
SetI ASST 6 cut(s) 93, 132, 174, 290, 298, 336
SfaNI GCATC 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 3 cut(s) 58, 222, 229
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 43, 274
TasI AATT 3 cut(s) 58, 222, 229
TatI WGTACW 2 cut(s) 3, 116
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 310
XapI RAATTY 2 cut(s) 58, 222
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.