Rmu_sc0000172.1_g000003

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000172.1
OG0000729
Physical Location & Seq
Reverse (-)
19056 .. 19993
938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000172.1_g000003.1.cds

Sequence Viewer

Length: 474 bp
atgggagggagagaggtagaagaaagcagcagaagccggaaagtagtgaacttaagcgtgagaagaaaatggctgaagacaagagagaaatggctagccgtcgtcggcgtcgttcttcacgctgtttacatgctcagcatcttcgacatctacttcaagtcccccattgttcacggcatggatctcgtctcccctcgcttccctgcccccgccaaactcctcgtcttactcgtcgactctctcggcagggacgaagacgttgtaaacgttgtggggaaggagtctatgaagcagataagagggtactcgaaattggagctcgggtcggttggaccggacggctcgtggagggtcggggcggagatagggacaagggagtcggataaggagagtctgaaggagttggtgaaggctgggattgatgtggtggtgttggatatctcacagatccagctcatggcaatggttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

157

Amino Acids

17.43

Weight (kDa)

9.18

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16350 AT1G79470
fragaria_vesca FvH4_3g14430 FvH4_3g14430
malus_domestica MD05G1237000.v1.1 MD05G1237500.v1.1 MD10G1213800.v1.1
prunus_persica Prupe.4G129200_v2.0.a1 Prupe.4G129200_v2.0.a1
pyrus_communis pycom05g21380 pycom10g18050 pycom10g18080 pycom10g18140 pycom10g18190
rosa_chinensis RchiOBHm_Chr1g0350061 RchiOBHm_Chr2g0101951 RchiOBHm_Chr2g0155871 RchiOBHm_Chr3g0468611 RchiOBHm_Chr3g0493461 RchiOBHm_Chr4g0401281 RchiOBHm_Chr4g0402021 RchiOBHm_Chr5g0023561 RchiOBHm_Chr5g0023571 RchiOBHm_Chr5g0023741 RchiOBHm_Chr7g0231801 RchiOBHm_Chr7g0234111 RchiOBHm_Chr7g0238791 RchiOBHm_Chr7g0239601
rosa_laevigata RLG00000032733
rosa_multiflora Rmu_co8005014.1_g000001 Rmu_co8223904.1_g000001 Rmu_sc0000087.1_g000007 Rmu_sc0000110.1_g000028 Rmu_sc0000172.1_g000003 Rmu_sc0000689.1_g000019 Rmu_sc0000870.1_g000014 Rmu_sc0001372.1_g000011 Rmu_sc0001516.1_g000086 Rmu_sc0001653.1_g000008 Rmu_sc0002862.1_g000001 Rmu_sc0002862.1_g000002 Rmu_sc0008652.1_g000002 Rmu_sc0011789.1_g000002 Rmu_sc0013252.1_g000001 Rmu_sc0017256.1_g000001 Rmu_sc0017907.1_g000002 Rmu_sc0017907.1_g000003 Rmu_sc0018737.1_g000003 Rmu_sc0020536.1_g000001 Rmu_sc0025127.1_g000001 Rmu_sc0028608.1_g000001 Rmu_sc0029703.1_g000001 Rmu_ssc0000027.1_g000015
rosa_roxburghii Rroxscaffold_1G00055450
rosa_rugosa Rorug03G0326300 Rorug05G0079400 Rorug05G0352300
rosa_samantha Rh5AG167200 Rh5AG169300 Rh5BG166700 Rh5CG181100 Rh5CG182300 Rh5DG168600 Rh6BG409700
rosa_wichuraiana Rw0G001580 Rw0G004990 Rw1G017410 Rw2G027840 Rw4G002740 Rw5G015190 Rw5G015310 Rw7G033830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 457
AccI GTMKAC 1 cut(s) 234
AciI CCGC 2 cut(s) 210, 359
AclI AACGTT 1 cut(s) 267
AclWI GGATC 2 cut(s) 189, 442
AcuI CTGAAG 2 cut(s) 95, 416
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 319, 454
AluI AGCT 2 cut(s) 319, 454
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 189, 442
Ama87I CYCGRG 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 418
AsuNHI GCTAGC 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 83, 261
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 3 cut(s) 83, 190, 355
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 28
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 147
BmtI GCTAGC 1 cut(s) 98
BpiI GAAGAC 2 cut(s) 83, 261
Bpu1102I GCTNAGC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 37, 335
BslFI GGGAC 3 cut(s) 145, 263, 382
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 145, 263, 382
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 181, 447
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 2 cut(s) 210, 359
BspCNI CTCAG 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 189, 442
BspTI CTTAAG 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 468
BssMI GATC 2 cut(s) 181, 447
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 108
BstAFI CTTAAG 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 134
BstKTI GATC 2 cut(s) 184, 450
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 181, 447
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 2 cut(s) 83, 261
BstX2I RGATCY 2 cut(s) 181, 447
BstYI RGATCY 2 cut(s) 181, 447
Cac8I GCNNGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 332
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 304
CviAII CATG 3 cut(s) 130, 178, 457
CviJI RGCY 8 cut(s) 36, 73, 94, 98, 319, 342, 413, 454
CviKI_1 RGCY 8 cut(s) 36, 73, 94, 98, 319, 342, 413, 454
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 183, 449
DpnII GATC 2 cut(s) 181, 447
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 95, 416
Eco88I CYCGRG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 319
EcoRV GATATC 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 3 cut(s) 133, 181, 460
FaiI YATR 4 cut(s) 131, 179, 287, 458
FaqI GGGAC 3 cut(s) 145, 263, 382
FatI CATG 3 cut(s) 129, 177, 456
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 95
GluI GCNGC 1 cut(s) 28
GsaI CCCAGC 1 cut(s) 417
HapII CCGG 2 cut(s) 37, 335
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 133, 181, 460
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 4 cut(s) 236, 281, 377, 391
HpaII CCGG 2 cut(s) 37, 335
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 5 cut(s) 49, 127, 172, 235, 265
Hpy188I TCNGA 2 cut(s) 382, 396
Hpy8I GTNNAC 5 cut(s) 49, 127, 172, 235, 265
Hpy99I CGWCG 4 cut(s) 104, 107, 113, 236
HpyAV CCTTC 3 cut(s) 271, 391, 403
HpyCH4IV ACGT 2 cut(s) 258, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 2 cut(s) 258, 267
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 133, 181, 460
Kzo9I GATC 2 cut(s) 181, 447
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 50, 216, 232, 348, 399, 464
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 258, 267
MalI GATC 2 cut(s) 183, 449
MboI GATC 2 cut(s) 181, 447
MboII GAAGA 6 cut(s) 32, 75, 88, 107, 133, 266
MflI RGATCY 2 cut(s) 181, 447
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 311
MlyI GAGTC 4 cut(s) 230, 290, 386, 400
MmeI TCCRAC 3 cut(s) 310, 360, 414
MnlI CCTC 5 cut(s) 7, 204, 230, 293, 342
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 2 cut(s) 37, 335
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 181, 447
NheI GCTAGC 1 cut(s) 94
NlaIII CATG 3 cut(s) 133, 181, 460
NmeAIII GCCGAG 1 cut(s) 222
NspI RCATGY 1 cut(s) 133
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 228, 249, 264
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 4 cut(s) 230, 289, 385, 399
PpsI GAGTC 4 cut(s) 230, 289, 385, 399
Psp124BI GAGCTC 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 413
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 2 cut(s) 181, 447
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 461
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 181, 447
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 4 cut(s) 230, 290, 386, 400
SduI GDGCHC 1 cut(s) 321
SetI ASST 5 cut(s) 18, 261, 270, 321, 456
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 210, 359
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 321
TaiI ACGT 2 cut(s) 261, 270
TaqI TCGA 3 cut(s) 144, 234, 308
TasI AATT 1 cut(s) 311
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 457
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 332
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.